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Motivation: Accurate detection of sequence similarity and homologous recombination are essential parts of many evolutionary analyses. Results: We have developed SimPlot++, an open-source multiplatform application implemented in Python,…

Quantitative Methods · Quantitative Biology 2022-04-14 Stéphane Samson , Étienne Lord , Vladimir Makarenkov

The Chinese Space Station Survey Telescope (CSST) is a next-generation Stage-IV facility renowned for its wide field of view, high image quality, and multi-band observational capabilities. Among the five instruments onboard the CSST, the…

We present SPLOT, a small scale pilot survey to test the potential of snapshot (single epoch) linear imaging polarimetry as a supplementary tool to traditional transient follow-up. Transients exist in a vast volume of observational…

High Energy Astrophysical Phenomena · Physics 2018-12-05 A. B. Higgins , K. Wiersema , S. Covino , R. L. C. Starling , H. F. Stevance , Ł. Wyrzykowski , S. T. Hodgkin , J. R. Maund , P. T. O'Brien , N. R. Tanvir

Interstellar molecules, which play an important role in astrochemistry, are identified using observed spectral lines. Despite the advent of spectral analysis tools in the past decade, the identification of spectral lines remains a tedious…

Astrophysics of Galaxies · Physics 2025-02-07 Yisheng Qiu , Tianwei Zhang , Thomas Möller , XueJian Jiang , Zihao Song , Huaxi Chen , Donghui Quan

Infrared (IR) spectroscopy is a pivotal analytical tool as it provides real-time molecular insight into material structures and enables the observation of reaction intermediates in situ. However, interpreting IR spectra often requires…

Chemical Physics · Physics 2025-06-17 Nitik Bhatia , Patrick Rinke , Ondrej Krejci

Variability Search Toolkit (VaST) is a software package designed to find variable objects in a series of sky images. It can be run from a script or interactively using its graphical interface. VaST relies on source list matching as opposed…

Instrumentation and Methods for Astrophysics · Physics 2017-12-19 Kirill V. Sokolovsky , Alexandr A. Lebedev

Context: The NIRSpec instrument for the James Webb Space Telescope (JWST) can be operated in multiobject (MOS), long-slit, and integral field (IFU) mode with spectral resolutions from 100 to 2700. Its MOS mode uses about a quarter of a…

IRIS (InfraRed Imaging Spectrograph) is a first light near-infrared diffraction limited imager and integral field spectrograph being designed for the future Thirty Meter Telescope (TMT). IRIS is optimized to perform astronomical studies…

We present MXtalTools, a flexible Python package for the data-driven modelling of molecular crystals, facilitating machine learning studies of the molecular solid state. MXtalTools comprises several classes of utilities: (1) synthesis,…

Machine Learning · Computer Science 2025-11-26 Michael Kilgour , Mark E. Tuckerman , Jutta Rogal

The widespread use of high-definition screens in edge devices, such as end-user cameras, smartphones, and televisions, is spurring a significant demand for image enhancement. Existing enhancement models often optimize for high performance…

Computer Vision and Pattern Recognition · Computer Science 2024-07-16 Sidi Yang , Binxiao Huang , Mingdeng Cao , Yatai Ji , Hanzhong Guo , Ngai Wong , Yujiu Yang

We present MoonLight, a tool for monitoring temporal and spatio-temporal properties of mobile and spatially distributed cyber-physical systems (CPS). In the proposed framework, space is represented as a weighted graph, describing the…

Logic in Computer Science · Computer Science 2021-05-17 Ezio Bartocci , Luca Bortolussi , Michele Loreti , Laura Nenzi , Simone Silvetti

GrayStar is a stellar atmospheric and spectral line modelling, post-processing, and visualisation code, suitable for classroom demonstrations and laboratory-style assignments, that has been developed in Java and deployed in JavaScript and…

Solar and Stellar Astrophysics · Physics 2014-09-08 C. Ian Short

The Near-Inrared Spectrograph (NIRSpec) on the James Webb Space Telescope (JWST) is a very versatile instrument, offering multiobject and integral field spectroscopy with varying spectral resolution ($\sim$30 to $\sim$3000) over a wide…

I present GrayStarServer (GSS), a stellar atmospheric modeling and spectrum synthesis code of pedagogical accuracy that is accessible in any web browser on commonplace computational devices and that runs on a time-scale of a few seconds.…

Instrumentation and Methods for Astrophysics · Physics 2016-08-31 C. Ian Short

AMDAT (Amorphous Molecular Dynamics Analysis Toolkit) is an open-source C++ toolkit for post-processing molecular dynamics trajectories, focused on high-performance static and dynamic analyses of amorphous, glassy, and polymer materials,…

Materials Science · Physics 2026-02-06 Pierre Kawak , William F. Drayer , David S. Simmons

We present a tool that primarily supports the ability to check bounded properties starting from a sequence of states in a run. The target design is compiled into an AIGNET which is then selectively and iteratively translated into an…

Software Engineering · Computer Science 2018-11-07 Rob Sumners

HST is commonly thought of as an optical-IR imaging or UV-spectroscopy observatory. However, the advent of WFC3-IR made it possible to do slitless infrared spectroscopic surveys over an area significant for galaxy evolution studies (~0.15…

Cosmology and Nongalactic Astrophysics · Physics 2012-09-10 Benjamin J. Weiner

Machine learning continues to grow in popularity in academia, in industry, and is increasingly used in other fields. However, most of the common metrics used to evaluate even simple binary classification models have shortcomings that are…

Machine Learning · Computer Science 2024-12-25 David H. Brown , Davide Chicco

Purpose: As interest in CEST-MRI grows, particularly in the preclinical setting, the necessity for standardized and easy-to-use acquisition and data analysis pipelines has become apparent. While vendors have increasingly introduced support…

We present a light and fast, public available, ray-tracer {\tt Splotch} software tool which supports the effective visualization of cosmological simulations data. We describe the algorithm it relies on, which is designed in order to deal…

Astrophysics · Physics 2008-12-18 K. Dolag , M. Reinecke , C. Gheller , S. Imboden
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