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Machine learning (ML) has been playing important roles in drug discovery in the past years by providing (pre-)screening tools for prioritising chemical compounds to pass through wet lab experiments. One of the main ML tasks in drug…

Biomolecules · Quantitative Biology 2025-02-25 Alex G. C. de Sá , David B. Ascher

Recent advances in computational materials science present novel opportunities for structure discovery and optimization, including uncovering of unsuspected compounds and metastable structures, electronic structure, surface, and…

Molecular discovery, when formulated as an optimization problem, presents significant computational challenges because optimization objectives can be non-differentiable. Evolutionary Algorithms (EAs), often used to optimize black-box…

Flow matching has emerged as a powerful generative framework, with recent few-step methods achieving remarkable inference acceleration. However, we identify a critical yet overlooked limitation: these models suffer from severe diversity…

Machine Learning · Computer Science 2026-04-15 Yexiong Lin , Jia Shi , Shanshan Ye , Wanyu Wang , Yu Yao , Tongliang Liu

Metadata vocabularies are used in various domains of study. It provides an in-depth description of the resources. In this work, we develop Algorithm Metadata Vocabulary (AMV), a vocabulary for capturing and storing the metadata about the…

Artificial Intelligence · Computer Science 2021-06-08 Biswanath Dutta , Jyotima Patel

Two fundamental challenges face generative models in engineering applications: the acquisition of high-performing, diverse datasets, and the adherence to precise constraints in generated designs. We propose a novel approach combining…

Neural and Evolutionary Computing · Computer Science 2024-05-17 Adam Gaier , James Stoddart , Lorenzo Villaggi , Shyam Sudhakaran

Standard language models generate text by selecting tokens from a fixed, finite, and standalone vocabulary. We introduce a novel method that selects context-aware phrases from a collection of supporting documents. One of the most…

Computation and Language · Computer Science 2024-03-19 Bowen Cao , Deng Cai , Leyang Cui , Xuxin Cheng , Wei Bi , Yuexian Zou , Shuming Shi

Code evolution is inevitable in modern software development. Changes to third-party APIs frequently break existing code and complicate maintenance, posing practical challenges for developers. While large language models (LLMs) have shown…

Software Engineering · Computer Science 2026-03-10 Jiazhen Kang , Yuchen Lu , Chen Jiang , Jinrui Liu , Tianhao Zhang , Bo Jiang , Ningyuan Sun , Tongtong Wu , Guilin Qi

Agent systems based on large language models (LLMs) have shown great potential in complex reasoning tasks, but building efficient and generalizable workflows remains a major challenge. Most existing approaches rely on manually designed…

Computation and Language · Computer Science 2025-10-01 Yanbo Wang , Zixiang Xu , Yue Huang , Xiangqi Wang , Zirui Song , Lang Gao , Chenxi Wang , Xiangru Tang , Yue Zhao , Arman Cohan , Xiangliang Zhang , Xiuying Chen

Debiased machine learning estimators for smooth functionals in nonparametric models can exhibit substantial variability and instability, often leading practitioners to instead rely on parametric or semiparametric working models. Such…

Methodology · Statistics 2026-03-20 Lars van der Laan , Marco Carone , Alex Luedtke , Mark van der Laan

Genetic algorithms constitute a family of black-box optimization algorithms, which take inspiration from the principles of biological evolution. While they provide a general-purpose tool for optimization, their particular instantiations can…

Neural and Evolutionary Computing · Computer Science 2023-04-11 Robert Tjarko Lange , Tom Schaul , Yutian Chen , Chris Lu , Tom Zahavy , Valentin Dalibard , Sebastian Flennerhag

Evolutionary algorithms have recently been used to create a wide range of artistic work. In this paper, we propose a new approach for the composition of new images from existing ones, that retain some salient features of the original…

Neural and Evolutionary Computing · Computer Science 2017-03-13 Aneta Neumann , Zygmunt L. Szpak , Wojciech Chojnacki , Frank Neumann

Investigating conformational landscapes of proteins is a crucial way to understand their biological functions and properties. AlphaFlow stands out as a sequence-conditioned generative model that introduces flexibility into structure…

Machine Learning · Computer Science 2024-07-18 Shaoning Li , Mingyu Li , Yusong Wang , Xinheng He , Nanning Zheng , Jian Zhang , Pheng-Ann Heng

Provenance in scientific workflows is essential for understand- ing and reproducing processes, while in business processes, it can ensure compliance and correctness and facilitates process mining. However, the provenance of process…

Cryptography and Security · Computer Science 2025-10-08 Ludwig Stage , Mirela Riveni , Raimundas Matulevičius , Dimka Karastoyanova

We propose GoalFlow, an end-to-end autonomous driving method for generating high-quality multimodal trajectories. In autonomous driving scenarios, there is rarely a single suitable trajectory. Recent methods have increasingly focused on…

Computer Vision and Pattern Recognition · Computer Science 2025-10-02 Zebin Xing , Xingyu Zhang , Yang Hu , Bo Jiang , Tong He , Qian Zhang , Xiaoxiao Long , Wei Yin

Accurate screening of cancer types is crucial for effective cancer detection and precise treatment selection. However, the association between gene expression profiles and tumors is often limited to a small number of biomarker genes. While…

Neural and Evolutionary Computing · Computer Science 2024-04-09 Xubin Wang , Yunhe Wang , Zhiqing Ma , Ka-Chun Wong , Xiangtao Li

We study how large language models can be used to evolve inventory policies in online, non-stationary environments. Our work is motivated by recent advances in LLM-based evolutionary search, such as AlphaEvolve, which demonstrates strong…

Machine Learning · Computer Science 2026-05-12 Chenyu Huang , Jianghao Lin , Zhengyang Tang , Bo Jiang , Ruoqing Jiang , Benyou Wang , Lai Wei

Continual learning in robotics seeks systems that can constantly adapt to changing environments and tasks, mirroring human adaptability. A key challenge is refining dynamics models, essential for planning and control, while addressing…

Robotics · Computer Science 2025-09-09 Alejandro Murillo-Gonzalez , Lantao Liu

Large language models (LLMs) have improved Verilog generation from natural-language specifications, but most pipelines still treat generation as isolated sampling followed by functional checking. This is insufficient for practical RTL…

Computation and Language · Computer Science 2026-05-27 Zehua Pei , Hui-Ling Zhen , Yu Zhang , Sinno Jialin Pan , Mingxuan Yuan , Bei Yu

Generative models have excelled in audio tasks using approaches such as language models, diffusion, and flow matching. However, existing generative approaches for speech enhancement (SE) face notable challenges: language model-based methods…

Audio and Speech Processing · Electrical Eng. & Systems 2025-05-28 Ziqian Wang , Zikai Liu , Xinfa Zhu , Yike Zhu , Mingshuai Liu , Jun Chen , Longshuai Xiao , Chao Weng , Lei Xie
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