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We describe a new method for the random sampling of connected networks with a specified degree sequence. We consider both the case of simple graphs and that of loopless multigraphs. The constraints of fixed degrees and of connectedness are…

Physics and Society · Physics 2020-12-03 Szabolcs Horvát , Carl D. Modes

An $h$-queue layout of a graph $G$ consists of a linear order of its vertices and a partition of its edges into $h$ queues, such that no two independent edges of the same queue nest. The minimum $h$ such that $G$ admits an $h$-queue layout…

Computational Geometry · Computer Science 2020-08-20 Sujoy Bhore , Robert Ganian , Fabrizio Montecchiani , Martin Nöllenburg

In a right-angle crossing (RAC) drawing of a graph, each edge is represented as a polyline and edge crossings must occur at an angle of exactly $90^\circ$, where the number of bends on such polylines is typically restricted in some way.…

Computational Geometry · Computer Science 2023-08-24 Cornelius Brand , Robert Ganian , Sebastian Röder , Florian Schager

Making use of a simplified model for protein folding, it can be shown that conformations which are particularly stable when their energy is minimized with respect to amino acid sequence (in the sense that they display a large energy gap to…

Soft Condensed Matter · Physics 2007-05-23 R. A. Broglia , G. Tiana , H. E. Roman

Over the past decade, we witness an increasing amount of interest in the design of exact exponential-time and parameterized algorithms for problems in Graph Drawing. Unfortunately, we still lack knowledge of general methods to develop such…

Data Structures and Algorithms · Computer Science 2023-10-10 Siddharth Gupta , Guy Sa'ar , Meirav Zehavi

We identify and study relevant structural parameters for the problem PerfMatch of counting perfect matchings in a given input graph $G$. These generalize the well-known tractable planar case, and they include the genus of $G$, its apex…

Computational Complexity · Computer Science 2015-11-10 Radu Curticapean , Mingji Xia

The Planar Contraction problem is to test whether a given graph can be made planar by using at most k edge contractions. This problem is known to be NP-complete. We show that it is fixed-parameter tractable when parameterized by k.

Data Structures and Algorithms · Computer Science 2012-04-24 Petr A. Golovach , Pim van 't Hof , Daniel Paulusma

In the bounded-degree cut problem, we are given a multigraph $G=(V,E)$, two disjoint vertex subsets $A,B\subseteq V$, two functions $\mathrm{u}_A, \mathrm{u}_B:V\to \{0,1,\ldots,|E|\}$ on $V$, and an integer $k\geq 0$. The task is to…

Data Structures and Algorithms · Computer Science 2020-12-29 Mingyu Xiao , Hiroshi Nagamochi

We study the NP-complete Minimum Shared Edges (MSE) problem. Given an undirected graph, a source and a sink vertex, and two integers p and k, the question is whether there are p paths in the graph connecting the source with the sink and…

Computational Complexity · Computer Science 2016-02-05 Till Fluschnik , Stefan Kratsch , Rolf Niedermeier , Manuel Sorge

We propose a novel method for large-scale image stitching that is robust against repetitive patterns and featureless regions in the imagery. In such cases, state-of-the-art image stitching methods easily produce image alignment artifacts,…

Computer Vision and Pattern Recognition · Computer Science 2021-07-29 Matti Pellikka , Valtteri Lahtinen

We study first-order model checking, by which we refer to the problem of deciding whether or not a given first-order sentence is satisfied by a given finite structure. In particular, we aim to understand on which sets of sentences this…

Logic in Computer Science · Computer Science 2014-07-15 Hubie Chen

This paper proposes a novel algorithm to reassemble an arbitrarily shredded image to its original status. Existing reassembly pipelines commonly consist of a local matching stage and a global compositions stage. In the local stage, a key…

Computer Vision and Pattern Recognition · Computer Science 2019-07-24 Canyu Le , Xin Li

We investigate crossing minimization for 1-page and 2-page book drawings. We show that computing the 1-page crossing number is fixed-parameter tractable with respect to the number of crossings, that testing 2-page planarity is…

Data Structures and Algorithms · Computer Science 2018-12-18 Michael J. Bannister , David Eppstein

Network reconstruction consists in determining the unobserved pairwise couplings between $N$ nodes given only observational data on the resulting behavior that is conditioned on those couplings -- typically a time-series or independent…

Data Structures and Algorithms · Computer Science 2024-05-08 Tiago P. Peixoto

We study the problems of counting copies and induced copies of a small pattern graph $H$ in a large host graph $G$. Recent work fully classified the complexity of those problems according to structural restrictions on the patterns $H$. In…

Computational Complexity · Computer Science 2024-04-15 Marco Bressan , Leslie Ann Goldberg , Kitty Meeks , Marc Roth

In a graph, a matching cut is an edge cut that is a matching. Matching Cut is the problem of deciding whether or not a given graph has a matching cut, which is known to be NP-complete even when restricted to bipartite graphs. It has been…

Computational Complexity · Computer Science 2018-10-29 Hoang-Oanh Le , Van Bang Le

A shortcoming of existing reachability approaches for nonlinear systems is the poor scalability with the number of continuous state variables. To mitigate this problem we present a simulation-based approach where we first sample a number of…

Systems and Control · Computer Science 2017-09-21 Murat Arcak , John Maidens

We consider the problem of finding a 1-planar drawing for a general graph, where a 1-planar drawing is a drawing in which each edge participates in at most one crossing. Since this problem is known to be NP-hard we investigate the…

Data Structures and Algorithms · Computer Science 2018-12-18 Michael J. Bannister , Sergio Cabello , David Eppstein

A central theme in phylogenetics is the reconstruction and analysis of evolutionary trees from a given set of data. To determine the optimal search methods for reconstructing trees, it is crucial to understand the size and structure of the…

Populations and Evolution · Quantitative Biology 2016-08-15 Jamie V. de Jong , Jeanette C McLeod , Mike Steel

The causal graph of a planning instance is an important tool for planning both in practice and in theory. The theoretical studies of causal graphs have largely analysed the computational complexity of planning for instances where the causal…

Artificial Intelligence · Computer Science 2014-02-05 Christer Bäckström , Peter Jonsson