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Medical image segmentation remains a formidable challenge due to the label scarcity. Pre-training Vision Transformer (ViT) through masked image modeling (MIM) on large-scale unlabeled medical datasets presents a promising solution,…

Computer Vision and Pattern Recognition · Computer Science 2025-02-13 Fenghe Tang , Qingsong Yao , Wenxin Ma , Chenxu Wu , Zihang Jiang , S. Kevin Zhou

Masked Autoencoder (MAE) has recently been shown to be effective in pre-training Vision Transformers (ViT) for natural image analysis. By reconstructing full images from partially masked inputs, a ViT encoder aggregates contextual…

Image and Video Processing · Electrical Eng. & Systems 2023-04-24 Lei Zhou , Huidong Liu , Joseph Bae , Junjun He , Dimitris Samaras , Prateek Prasanna

Masked autoencoder (MAE) is a promising self-supervised pre-training technique that can improve the representation learning of a neural network without human intervention. However, applying MAE directly to volumetric medical images poses…

Computer Vision and Pattern Recognition · Computer Science 2023-08-24 Jia-Xin Zhuang , Luyang Luo , Hao Chen

In the field of medical image segmentation, challenges such as indistinct lesion features, ambiguous boundaries,and multi-scale characteristics have long revailed. This paper proposes an improved method named Intensity-Spatial Dual Masked…

Image and Video Processing · Electrical Eng. & Systems 2025-02-17 Yuexing Ding , Jun Wang , Hongbing Lyu

Vision Transformer (ViT) suffers from data scarcity in semi-supervised learning (SSL). To alleviate this issue, inspired by masked autoencoder (MAE), which is a data-efficient self-supervised learner, we propose Semi-MAE, a pure ViT-based…

Computer Vision and Pattern Recognition · Computer Science 2023-01-05 Haojie Yu , Kang Zhao , Xiaoming Xu

Ultrasound imaging is one of the most widely used diagnostic modalities, offering real-time, radiation-free assessment across diverse clinical domains. However, interpretation of ultrasound images remains challenging due to high noise…

Image and Video Processing · Electrical Eng. & Systems 2025-11-10 Youssef Megahed , Robin Ducharme , Aylin Erman , Mark Walker , Steven Hawken , Adrian D. C. Chan

Transformer architectures, including nnFormer,have demonstrated promising results in volumetric medical image segmentation by being able to capture long-range spatial interactions. Although they have high performance, these models need…

Computer Vision and Pattern Recognition · Computer Science 2026-04-28 R. M. Krishna Sureddi , T. Satyanarayana Murthy , Nomula Varsha Reddy , Adi Kanishka , Nalla Manvika Reddy

This paper shows that masked autoencoders (MAE) are scalable self-supervised learners for computer vision. Our MAE approach is simple: we mask random patches of the input image and reconstruct the missing pixels. It is based on two core…

Computer Vision and Pattern Recognition · Computer Science 2021-12-21 Kaiming He , Xinlei Chen , Saining Xie , Yanghao Li , Piotr Dollár , Ross Girshick

Masked autoencoders (MAEs) have displayed significant potential in the classification and semantic segmentation of medical images in the last year. Due to the high similarity of human tissues, even slight changes in medical images may…

Computer Vision and Pattern Recognition · Computer Science 2023-05-11 Jiawei Mao , Shujian Guo , Yuanqi Chang , Xuesong Yin , Binling Nie

Deep neural networks are powerful tools for biomedical image segmentation. These models are often trained with heavy supervision, relying on pairs of images and corresponding voxel-level labels. However, obtaining segmentations of…

Image and Video Processing · Electrical Eng. & Systems 2020-04-30 Evan M. Yu , Juan Eugenio Iglesias , Adrian V. Dalca , Mert R. Sabuncu

The Vision Transformer (ViT) has demonstrated remarkable performance in Self-Supervised Learning (SSL) for 3D medical image analysis. Masked AutoEncoder (MAE) for feature pre-training can further unleash the potential of ViT on various…

Computer Vision and Pattern Recognition · Computer Science 2025-01-13 Jiaxin Zhuang , Linshan Wu , Qiong Wang , Peng Fei , Varut Vardhanabhuti , Lin Luo , Hao Chen

Generating semantic segmentation datasets has consistently been laborious and time-consuming, particularly in the context of large models or specialized domains(i.e. Medical Imaging or Remote Sensing). Specifically, large models necessitate…

Computer Vision and Pattern Recognition · Computer Science 2023-10-03 Jiaru Jia , Mingzhe Liu , Jiake Xie , Xin Chen , Hong Zhang , Feixiang Zhao , Aiqing Yang

Missing input sequences are common in medical imaging data, posing a challenge for deep learning models reliant on complete input data. In this work, inspired by MultiMAE [2], we develop a masked autoencoder (MAE) paradigm for multi-modal,…

Computer Vision and Pattern Recognition · Computer Science 2026-02-04 Ayhan Can Erdur , Christian Beischl , Daniel Scholz , Jiazhen Pan , Benedikt Wiestler , Daniel Rueckert , Jan C Peeken

Large-scale medical segmentation datasets often combine manual and pseudo-labels of uneven quality, which can compromise training and evaluation. Low-quality labels may hamper performance and make the model training less robust. To address…

Computer Vision and Pattern Recognition · Computer Science 2026-01-22 Yixiong Chen , Zongwei Zhou , Wenxuan Li , Alan Yuille

The Masked Autoencoder (MAE) has recently demonstrated effectiveness in pre-training Vision Transformers (ViT) for analyzing natural images. By reconstructing complete images from partially masked inputs, the ViT encoder gathers contextual…

Image and Video Processing · Electrical Eng. & Systems 2025-06-03 Badhan Kumar Das , Gengyan Zhao , Han Liu , Thomas J. Re , Dorin Comaniciu , Eli Gibson , Andreas Maier

Masked Autoencoders (MAEs) have been shown to be effective in pre-training Vision Transformers (ViTs) for natural and medical image analysis problems. By reconstructing missing pixel/voxel information in visible patches, a ViT encoder can…

Computer Vision and Pattern Recognition · Computer Science 2025-11-20 Pengfei Gu , Huimin Li , Yejia Zhang , Chaoli Wang , Danny Z. Chen

There has been a growing interest in using deep learning models for processing long surgical videos, in order to automatically detect clinical/operational activities and extract metrics that can enable workflow efficiency tools and…

Computer Vision and Pattern Recognition · Computer Science 2023-05-22 Muhammad Abdullah Jamal , Omid Mohareri

The development of deep learning models in medical image analysis is majorly limited by the lack of large-sized and well-annotated datasets. Unsupervised learning does not require labels and is more suitable for solving medical image…

Computer Vision and Pattern Recognition · Computer Science 2023-01-06 Zi'an Xu , Yin Dai , Fayu Liu , Weibing Chen , Yue Liu , Lifu Shi , Sheng Liu , Yuhang Zhou

Medical image segmentation based on deep learning is often faced with the problems of insufficient datasets and long time-consuming labeling. In this paper, we introduce the self-supervised method MAE(Masked Autoencoders) into knee joint…

Computer Vision and Pattern Recognition · Computer Science 2022-05-10 Yuhan Xie , Kexin Jiang , Zhiyong Zhang , Shaolong Chen , Xiaodong Zhang , Changzhen Qiu

Medical imaging tasks are very challenging due to the lack of publicly available labeled datasets. Hence, it is difficult to achieve high performance with existing deep-learning models as they require a massive labeled dataset to be trained…

Image and Video Processing · Electrical Eng. & Systems 2024-07-23 Anubhav Gupta , Islam Osman , Mohamed S. Shehata , John W. Braun
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