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Identifying governing equations in physical and biological systems from datasets remains a long-standing challenge across various scientific disciplines, providing mechanistic insights into complex system evolution. Common methods like…

Dynamical Systems · Mathematics 2025-02-28 Mehrdad Anvari , Hamidreza Marasi , Hossein Kheiri

Network science provides valuable insights across numerous disciplines including sociology, biology, neuroscience and engineering. A task of major practical importance in these application domains is inferring the network structure from…

Machine Learning · Computer Science 2019-05-01 Vassilis N. Ioannidis , Yanning Shen , Georgios B. Giannakis

This work proposes an iterative sparse-regularized regression method to recover governing equations of nonlinear dynamical systems from noisy state measurements. The method is inspired by the Sparse Identification of Nonlinear Dynamics…

Machine Learning · Statistics 2021-02-24 Alexandre Cortiella , Kwang-Chun Park , Alireza Doostan

Dynamical systems in which local interactions among agents give rise to complex emerging phenomena are ubiquitous in nature and society. This work explores the problem of inferring the unknown interaction structure (represented as a graph)…

Machine Learning · Computer Science 2021-06-01 Gerrit Großmann , Julian Zimmerlin , Michael Backenköhler , Verena Wolf

In an era of unprecedented deluge of (mostly unstructured) data, graphs are proving more and more useful, across the sciences, as a flexible abstraction to capture complex relationships between complex objects. One of the main challenges…

Disordered Systems and Neural Networks · Physics 2016-10-17 Alaa Saade

Traditional functional connectivity based on functional magnetic resonance imaging (fMRI) can only capture pairwise interactions between brain regions. Hypergraphs, which reveal high-order relationships among multiple brain regions, have…

Neurons and Cognition · Quantitative Biology 2025-05-20 Wenqi Hu , Xuerui Su , Guanliang Li , Yidi Pan , Aijing Lin

Dynamic graph neural networks have been widely used in modeling and representation learning of graph structure data. Current dynamic representation learning focuses on either discrete learning which results in temporal information loss or…

Machine Learning · Computer Science 2022-02-11 Yan Pang , Chao Liu

Many dynamical systems exhibit oscillatory behavior that can be modeled with differential equations. Recently, these equations have increasingly been derived through data-driven methods, including the transparent technique known as Sparse…

Adaptation and Self-Organizing Systems · Physics 2024-07-03 Bartosz Prokop , Nikita Frolov , Lendert Gelens

Revealing physical interactions in complex systems from observed collective dynamics constitutes a fundamental inverse problem in science. Current reconstruction methods require access to a system's model or dynamical data at a level of…

Physics and Society · Physics 2018-01-18 Mor Nitzan , Jose Casadiego , Marc Timme

Power grid parameter estimation involves the estimation of unknown parameters, such as inertia and damping coefficients, using observed dynamics. In this work, we present a comparison of data-driven algorithms for the power grid parameter…

Systems and Control · Electrical Eng. & Systems 2021-07-09 Subhash Lakshminarayana , Saurav Sthapit , Carsten Maple

One way to understand time-series data is to identify the underlying dynamical system which generates it. This task can be done by selecting an appropriate model and a set of parameters which best fits the dynamics while providing the…

Optimization and Control · Mathematics 2018-05-17 Linan Zhang , Hayden Schaeffer

Modern societies have an abundance of data yet good system models are rare. Unfortunately, many of the current system identification and machine learning techniques fail to generalize outside of the training set, producing models that…

Systems and Control · Electrical Eng. & Systems 2023-11-27 Gabriel F. Machado , Morgan Jones

Hypergraphs provide a principled framework for modeling polyadic interactions, with applications in recommendation systems, social networks, and molecular modeling. Hypergraph generation remains challenging because incidence structures are…

Machine Learning · Statistics 2026-05-19 Xinyi Hong , Shuntuo Xu , Zhou Yu

Identifying dynamical systems characterized by nonlinear parameters presents significant challenges in deriving mathematical models that enhance understanding of physics. Traditional methods, such as Sparse Identification of Nonlinear…

Machine Learning · Computer Science 2025-08-12 Siva Viknesh , Younes Tatari , Chase Christenson , Amirhossein Arzani

Vortex-induced vibrations (VIV) remain a canonical yet complex manifestation of fluid-structure interactions, where coupled nonlinear dynamics govern the motion of bluff bodies. For several years, we have relied on traditional reduced-order…

Fluid Dynamics · Physics 2026-03-31 Haimi Jha , Hibah Saddal , Chandan Bose

Inferring a binary connectivity graph from resting-state fMRI data for a single subject requires making several methodological choices and assumptions that can significantly affect the results. In this study, we investigate the robustness…

Methodology · Statistics 2025-03-20 Alice Chevaux , Ali Fahkar , Kévin Polisano , Irène Gannaz , Sophie Achard

Sparse identification of nonlinear dynamics (SINDy) is a data-driven framework for estimating classical nonlinear dynamical systems from time-series data. In this approach, system dynamics is represented as a linear combination of a…

Quantum Physics · Physics 2026-02-17 Yusei Tateyama , Yuzuru Kato

The topology of interactions in network dynamical systems fundamentally underlies their function. Accelerating technological progress creates massively available data about collective nonlinear dynamics in physical, biological, and…

Physics and Society · Physics 2018-03-28 Jose Casadiego , Mor Nitzan , Sarah Hallerberg , Marc Timme

The field of hypothesis generation promises to reduce costs in neuroscience by narrowing the range of interventional studies needed to study various phenomena. Existing machine learning methods can generate scientific hypotheses from…

Machine Learning · Computer Science 2025-07-04 Zachary C. Brown , David Carlson

Effective analysis in neuroscience benefits significantly from robust conceptual frameworks. Traditional metrics of interbrain synchrony in social neuroscience typically depend on fixed, correlation-based approaches, restricting their…

Neurons and Cognition · Quantitative Biology 2025-12-01 Nicolás Hinrichs , Noah Guzmán , Melanie Weber
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