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Blood vessel constriction is simulated with particle-based method using a molecular dynamics authoring software known as Molecular Workbench (WM). Blood flow and vessel wall, the only components considered in constructing a blood vessel,…

Biological Physics · Physics 2014-04-01 Mohamad Rendi , Suprijadi , Sparisoma Viridi

The conformation and scaling properties of self-avoiding fluid vesicles with zero extrinsic bending rigidity subject to an internal pressure increment $\Delta p>0$ are studied using Monte Carlo methods and scaling arguments. With increasing…

High Energy Physics - Lattice · Physics 2009-10-22 G. Gompper , D. M. Kroll

We propose a theoretical framework to predict the three-dimensional shapes of optically deformed micron-sized emulsion droplets with ultra-low interfacial tension. The resulting shape and size of the droplet arises out of a balance between…

Soft Condensed Matter · Physics 2015-06-16 David Tapp , Jonathan M. Taylor , Alex S. Lubanksy , Colin D. Bain , Buddhapriya Chakrabarti

The "Fluid Mechanic Sewing Machine" creates periodic patterns through the coiling nature of a viscous fluid falling onto a moving surface. At relatively moderate heights, the reported patterns are translating coiling, alternating loops, W…

Pattern Formation and Solitons · Physics 2025-10-20 Will Sze , Eusebius J. Doedel , Ida Karimfazli , Behrooz Yousefzadeh

This article delves into the micro-macro modeling of polymeric fluids, considering various microscopic potential energies, including the classical Hookean potential, as well as newly proposed modified Morse and Elastic-plastic potentials.…

Soft Condensed Matter · Physics 2023-09-27 Xuelian Bao , Huaxiong Huang , Zilong Song , Shixin Xu

A microfluidic device is constructed from PDMS with a single channel having a short section that is a thin flexible membrane, in order to investigate the complex fluid-structure interaction that arises between a flowing fluid and a…

Soft Condensed Matter · Physics 2020-07-03 Debadi Chakraborty , J. Ravi Prakash , Leslie Yeo , James Friend

A 3D fluid-structure interaction solver based on an improved weakly-compressible moving particle simulation (WC-MPS) method and a geometrically nonlinear shell structural model is developed and applied to hydro-elastic free-surface flows.…

Fluid Dynamics · Physics 2023-04-05 Rubens Augusto Amaro Junior , Alfredo Gay Neto , Liang-Yee Cheng

We numerically study confined channel foam flow around an obstacle using a two-dimensional bubble model, inspired by experiments performed in the same geometry. We systematically vary the polydispersity, the external driving force, and the…

Soft Condensed Matter · Physics 2026-03-24 Bahaa Mazloum , Alexandre Stepanetz , Benjamin Dollet , Misaki Ozawa

We investigate droplet deformation following laser-pulse impact at low Weber numbers (We ~ 0.1-100). Droplet dynamics can be characterized by two key parameters: the impact We number and the width, W, of the distribution of the impact force…

Fluid Dynamics · Physics 2025-10-31 M. Kharbedia , H. L. França , H. K. Schubert , D. J. Engels , M. Jalaal , O. O. Versolato

For theoretical gas dynamics, the flow regimes are classified according to the Knudsen number. For computational fluid dynamics (CFD), the numerical flow field is the projection of the physical flow field onto the discrete space and time,…

Computational Physics · Physics 2018-05-28 Chang Liu , Kun Xu , Guangzhao Zhou

This paper presents bone adaptation as a geometric flow. The proposed method is based on two assumptions: first, that the bone surface is smooth (not fractal) permitting the definition of a tangent plane and, second, that the interface…

Quantitative Methods · Quantitative Biology 2021-11-10 Bryce A. Besler , Tannis D. Kemp , Nils D. Forkert , Steven K. Boyd

Dense mixtures of particles of varying size tend to segregate based on size during flow. Granular size-segregation plays an important role in many industrial and geophysical processes, but the development of coupled, continuum models…

Soft Condensed Matter · Physics 2024-08-13 Harkirat Singh , Daren Liu , David L. Henann

A second derivative-based moment method is proposed for describing the thickness and shape of the region where viscous forces are dominant in turbulent boundary layer flows. Rather than the fixed location sublayer model presently employed,…

Fluid Dynamics · Physics 2020-09-21 David Weyburne

We study the effects of confinement between two parallel walls on a two dimensional fluid with competing interactions which lead to the formation of particle micro-domains at the thermodynamic equilibrium (microphases or microseparation).…

Soft Condensed Matter · Physics 2009-11-13 A. Imperio , L. Reatto

Particle Image Velocimetry (PIV) and Particle Tracking Velocimetry (PTV) have been employed to investigate the dynamics of finite-size spherical particles, slightly heavier than the carrier fluid, in a horizontal turbulent square duct flow.…

Fluid Dynamics · Physics 2019-02-13 Sagar Zade , Walter Fornari , Fredrik Lundell , Luca Brandt

Our previous molecular dynamic simulation studies of simple two-dimensional (2D) systems \cite{matt_big} suggested that both geometrical defects (localized, large-amplitude deviations from hexagonal ordering) and topological defects…

Statistical Mechanics · Physics 2007-05-23 Yves Lansac , Matthew A. Glaser , Noel A. Clark

The formation of biomolecular condensates inside cells often involve intrinsically disordered proteins (IDPs), and several of these IDPs are also capable of forming droplet-like dense assemblies on their own, through liquid-liquid phase…

Biological Physics · Physics 2020-02-26 Daniel Nilsson , Anders Irbäck

During the melting transition of dimyristoyl phosphatidylglycerol (DMPG), the order of the lipid chains and the three-dimensional, vesicular structural arrangement change simultaneously. These changes result in peculiar heat capacity…

Biological Physics · Physics 2025-09-29 Thomas Heimburg , Holger Ebel , Peter Grabitz , Julia Preu , Yue Wang

The effects of elasticity on filament thinning and breakup are investigated in microchannel cross flow. When a viscous solution is stretched by an external immiscible fluid, a low 100 ppm polymer concentration strongly affects the breakup…

Fluid Dynamics · Physics 2008-04-14 P. E. Arratia , J. P. Gollub , D. J. Durian

In this paper we study the shape characteristics of a polymer chain in a good solvent using a mesoscopic level of modelling. The dissipative particle dynamics simulations are performed in the $3D$ space at a range of chain lengths $N$. The…

Soft Condensed Matter · Physics 2016-11-24 Ostap Kalyuzhnyi , Jaroslav Ilnytskyi , Yurij Holovatch , Christian von Ferber