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Motivation: This paper presents libRoadRunner 2.0, an extensible, high-performance, cross-platform, open-source software library for the simulation and analysis of models expressed using Systems Biology Markup Language SBML). Results:…

Quantitative Methods · Quantitative Biology 2022-03-03 Ciaran Welsh , Jin Xu , Lucian Smith , Matthias König , Kiri Choi , Herbert M. Sauro

Bug reports are often unstructured and verbose, making it challenging for developers to efficiently comprehend software issues. Existing summarization approaches typically rely on surface-level textual cues, resulting in incomplete or…

Task automation has been greatly empowered by the recent advances in Large Language Models (LLMs) via Python code, where the tasks ranging from software engineering development to general-purpose reasoning. While current benchmarks have…

Understanding code is challenging, especially when working in new and complex development environments. Code comments and documentation can help, but are typically scarce or hard to navigate. Large language models (LLMs) are revolutionizing…

Software Engineering · Computer Science 2024-01-18 Daye Nam , Andrew Macvean , Vincent Hellendoorn , Bogdan Vasilescu , Brad Myers

In the domain of chip design, Hardware Description Languages (HDLs) play a pivotal role. However, due to the complex syntax of HDLs and the limited availability of online resources, debugging HDL codes remains a difficult and time-intensive…

Hardware Architecture · Computer Science 2024-03-19 Xufeng Yao , Haoyang Li , Tsz Ho Chan , Wenyi Xiao , Mingxuan Yuan , Yu Huang , Lei Chen , Bei Yu

The evaluation of large language models (LLMs) is crucial to assess their performance and mitigate potential security risks. In this paper, we introduce PromptBench, a unified library to evaluate LLMs. It consists of several key components…

Artificial Intelligence · Computer Science 2024-08-21 Kaijie Zhu , Qinlin Zhao , Hao Chen , Jindong Wang , Xing Xie

Static analysis plays a crucial role in software vulnerability detection, yet faces a persistent precision-scalability tradeoff. In large codebases like the Linux kernel, traditional static analysis tools often generate excessive false…

Software Engineering · Computer Science 2025-06-03 Haonan Li , Hang Zhang , Kexin Pei , Zhiyun Qian

Large Language Models (LLMs), such as ChatGPT, are increasingly leveraged for generating both traditional software code and spreadsheet logic. Despite their impressive generative capabilities, these models frequently exhibit critical issues…

Software Engineering · Computer Science 2025-11-27 Simon Thorne , Advait Sarkar

The proliferation of large language models (LLMs) has underscored concerns regarding their security vulnerabilities, notably against jailbreak attacks, where adversaries design jailbreak prompts to circumvent safety mechanisms for potential…

Cryptography and Security · Computer Science 2025-06-10 Yingchaojie Feng , Zhizhang Chen , Zhining Kang , Sijia Wang , Haoyu Tian , Wei Zhang , Minfeng Zhu , Wei Chen

Large Language Models (LLMs) have emerged as a promising alternative to traditional static program analysis methods, such as symbolic execution, offering the ability to reason over code directly without relying on theorem provers or SMT…

Programming Languages · Computer Science 2025-09-22 Yihe Li , Ruijie Meng , Gregory J. Duck

Reducing application runtime, scaling parallel applications to higher numbers of processes/threads, and porting applications to new hardware architectures are tasks necessary in the software development process. Therefore, developers have…

Software Engineering · Computer Science 2017-12-06 Ronny Tschüter , Johannes Ziegenbalg , Bert Wesarg , Matthias Weber , Christian Herold , Sebastian Döbel , Ronny Brendel

Recently, the ChatGPT LLM has received great attention: it can be used as a bot for discussing source code, prompting it to suggest changes, provide descriptions or even generate code. Typical demonstrations generally focus on existing…

Software Engineering · Computer Science 2023-09-01 Haoye Tian , Weiqi Lu , Tsz On Li , Xunzhu Tang , Shing-Chi Cheung , Jacques Klein , Tegawendé F. Bissyandé

LLMs are transforming software development, yet current code generation and code repair benchmarks mainly assess syntactic and functional correctness in simple, single-error cases. LLMs' capabilities to autonomously find and fix runtime…

Computation and Language · Computer Science 2025-09-17 Zhiyu Yang , Shuo Wang , Yukun Yan , Yang Deng

Information Retrieval-based Bug Localization (IRBL) aims to identify buggy source files for a given bug report. Traditional and deep learning-based IRBL techniques often suffer from vocabulary mismatch and dependence on project-specific…

Software Engineering · Computer Science 2026-04-23 Moumita Asad , Rafed Muhammad Yasir , Sam Malek

Benchmarks for large language models (LLMs) have progressed from snippet-level function generation to repository-level issue resolution, yet they overwhelmingly target implementation correctness. Software architecture tasks remain…

Software Engineering · Computer Science 2026-03-19 Bassam Adnan , Aviral Gupta , Sreemaee Akshathala , Karthik Vaidhyanathan

System logs are a cornerstone of cybersecurity, supporting proactive breach prevention and post-incident investigations. However, analyzing vast amounts of diverse log data remains significantly challenging, as high costs, lack of in-house…

Artificial Intelligence · Computer Science 2025-10-29 Peng Cai , Reza Ryan , Nickson M. Karie

Software documentation is essential for program comprehension, developer onboarding, code review, and long-term maintenance. Yet producing quality documentation manually is time-consuming and frequently yields incomplete or inconsistent…

Software Engineering · Computer Science 2026-04-20 Afia Farjana , Zaiyu Cheng , Antonio Mastropaolo

Bug tracking systems play a crucial role in software maintenance, yet developers frequently struggle with low-quality user-submitted reports that omit essential details such as Steps to Reproduce (S2R), Observed Behavior (OB), and Expected…

Software Engineering · Computer Science 2026-04-30 Emre Furkan Akyol , Mehmet Dedeler , Eray Tüzün

Verifying hardware designs in embedded systems is crucial but often labor-intensive and time-consuming. While existing solutions have improved automation, they frequently rely on unrealistic assumptions. To address these challenges, we…

Hardware Architecture · Computer Science 2024-11-26 Yuchen Hu , Junhao Ye , Ke Xu , Jialin Sun , Shiyue Zhang , Xinyao Jiao , Dingrong Pan , Jie Zhou , Ning Wang , Weiwei Shan , Xinwei Fang , Xi Wang , Nan Guan , Zhe Jiang

Bug reproduction is a critical developer activity that is also challenging to automate, as bug reports are often in natural language and thus can be difficult to transform to test cases consistently. As a result, existing techniques mostly…

Software Engineering · Computer Science 2023-11-10 Sungmin Kang , Juyeon Yoon , Nargiz Askarbekkyzy , Shin Yoo