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We introduce and study methods for inferring and learning from correspondences among neurons. The approach enables alignment of data from distinct multiunit studies of nervous systems. We show that the methods for inferring correspondences…

Neurons and Cognition · Quantitative Biology 2015-01-28 Ashish Kapoor , E. Paxon Frady , Stefanie Jegelka , William B. Kristan , Eric Horvitz

Modern deep neural networks increasingly make use of features such as dynamic control flow, data structures and dynamic tensor shapes. Existing deep learning systems focus on optimizing and executing static neural networks which assume a…

Programming Languages · Computer Science 2021-03-15 Haichen Shen , Jared Roesch , Zhi Chen , Wei Chen , Yong Wu , Mu Li , Vin Sharma , Zachary Tatlock , Yida Wang

Our ability to use deep learning approaches to decipher neural activity would likely benefit from greater scale, in terms of both model size and datasets. However, the integration of many neural recordings into one unified model is…

Medical image segmentation supports clinical workflows by precisely delineating anatomical structures and lesions. However, medical image datasets medical image datasets suffer from acquisition noise and annotation ambiguity, causing…

Artificial Intelligence · Computer Science 2026-04-14 Ruiyang Li , Fang Liu , Licheng Jiao , Xinglin Xie , Jiayao Hao , Shuo Li , Xu Liu , Jingyi Yang , Lingling Li , Puhua Chen , Wenping Ma

Representations of sets are challenging to learn because operations on sets should be permutation-invariant. To this end, we propose a Permutation-Optimisation module that learns how to permute a set end-to-end. The permuted set can be…

Machine Learning · Computer Science 2019-01-16 Yan Zhang , Jonathon Hare , Adam Prügel-Bennett

This study presents a systematic machine learning approach for creating efficient hybrid models and discovering sorption uptake models in non-linear advection-diffusion-sorption systems. It demonstrates an effective method to train these…

Computational Engineering, Finance, and Science · Computer Science 2023-04-27 Vinicius V. Santana , Erbet Costa , Carine M. Rebello , Ana Mafalda Ribeiro , Chris Rackauckas , Idelfonso B. R. Nogueira

We propose to use deep neural networks for generating samples in Monte Carlo integration. Our work is based on non-linear independent components estimation (NICE), which we extend in numerous ways to improve performance and enable its…

Machine Learning · Computer Science 2019-09-04 Thomas Müller , Brian McWilliams , Fabrice Rousselle , Markus Gross , Jan Novák

Neural networks are proven to be remarkably successful for classification and diagnosis in medical applications. However, the ambiguity in the decision-making process and the interpretability of the learned features is a matter of concern.…

Computer Vision and Pattern Recognition · Computer Science 2019-08-20 Ashkan Khakzar , Shadi Albarqouni , Nassir Navab

Knowledge about the collective dynamics of cortical spiking is very informative about the underlying coding principles. However, even most basic properties are not known with certainty, because their assessment is hampered by spatial…

Neurons and Cognition · Quantitative Biology 2019-03-13 Jens Wilting , Viola Priesemann

Improving the interpretability of deep neural networks has recently gained increased attention, especially when the power of deep learning is leveraged to solve problems in physics. Interpretability helps us understand a model's ability to…

Sound · Computer Science 2023-10-12 Karim Helwani , Erfan Soltanmohammadi , Michael M. Goodwin

Hyperbolic spaces, which have the capacity to embed tree structures without distortion owing to their exponential volume growth, have recently been applied to machine learning to better capture the hierarchical nature of data. In this…

Machine Learning · Computer Science 2021-03-18 Ryohei Shimizu , Yusuke Mukuta , Tatsuya Harada

The Chan-Vese (CV) model is a classic region-based method in image segmentation. However, its piecewise constant assumption does not always hold for practical applications. Many improvements have been proposed but the issue is still far…

Computer Vision and Pattern Recognition · Computer Science 2022-04-15 Dihan Zheng , Chenglong Bao , Zuoqiang Shi , Haibin Ling , Kaisheng Ma

The present phase of Machine Learning is characterized by supervised learning algorithms relying on large sets of labeled examples ($n \to \infty$). The next phase is likely to focus on algorithms capable of learning from very few labeled…

Computer Vision and Pattern Recognition · Computer Science 2014-03-12 Fabio Anselmi , Joel Z. Leibo , Lorenzo Rosasco , Jim Mutch , Andrea Tacchetti , Tomaso Poggio

Despite substantial research into the biological basis of memory, the precise mechanisms by which experiences are encoded, stored, and retrieved in the brain remain incompletely understood. A growing body of evidence supports the engram…

Neural and Evolutionary Computing · Computer Science 2025-10-28 Daniel Szelogowski

This paper presents an innovative approach, called credal wrapper, to formulating a credal set representation of model averaging for Bayesian neural networks (BNNs) and deep ensembles (DEs), capable of improving uncertainty estimation in…

Machine Learning · Computer Science 2025-05-12 Kaizheng Wang , Fabio Cuzzolin , Keivan Shariatmadar , David Moens , Hans Hallez

Estimating treatment effects from observational data is challenging due to two main reasons: (a) hidden confounding, and (b) covariate mismatch (control and treatment groups not having identical distributions). Long lines of works exist…

Machine Learning · Computer Science 2025-04-30 Praharsh Nanavati , Ranjitha Prasad , Karthikeyan Shanmugam

Convolutional neural networks (CNNs) have been successfully applied to many recognition and learning tasks using a universal recipe; training a deep model on a very large dataset of supervised examples. However, this approach is rather…

Machine Learning · Statistics 2018-06-04 Ozan Sener , Silvio Savarese

The quintessential property of neuronal systems is their intensive patterns of selective synaptic connections. The current work describes a physics-based approach to neuronal shape modeling and synthesis and its consideration for the…

Neurons and Cognition · Quantitative Biology 2009-11-10 Luciano da Fontoura Costa , Regina Celia Coelho

Model Interpretation aims at the extraction of insights from the internals of a trained model. A common approach to address this task is the characterization of relevant features internally encoded in the model that are critical for its…

Machine Learning · Computer Science 2024-10-07 Hamed Behzadi-Khormouji , José Oramas

This paper studies an input-driven one-state differential equation model initially developed for an experimentally demonstrated dynamic molecular switch that switches like synapses in the brain do. The linear-in-the-state and…

Machine Learning · Computer Science 2025-08-22 H. I. Nurdin , C. A. Nijhuis