Related papers: T-Rex: Text-assisted Retrosynthesis Prediction

Addressing the global challenge of breast cancer, this research explores the fusion of generative AI, focusing on ChatGPT 3.5 turbo model, and the intricacies of breast cancer risk assessment. The research aims to evaluate ChatGPT's…

Deep generative models are able to suggest new organic molecules by generating strings, trees, and graphs representing their structure. While such models allow one to generate molecules with desirable properties, they give no guarantees…

The widespread adoption of ChatGPT has raised concerns about its misuse, highlighting the need for robust detection of AI-generated text. Current word-level detectors are vulnerable to paraphrasing or simple prompts (PSP), suffer from…

Agentic Retrieval-Augmented Generation (RAG) is a new paradigm where the reasoning model decides when to invoke a retriever (as a "tool") when answering a question. This paradigm, exemplified by recent research works such as Search-R1,…

Since regular expressions (abbrev. regexes) are difficult to understand and compose, automatically generating regexes has been an important research problem. This paper introduces TransRegex, for automatically constructing regexes from both…

Generative AI tools exemplified by ChatGPT are becoming a new reality. This study is motivated by the premise that ``AI generated content may exhibit a distinctive behavior that can be separated from scientific articles''. In this study, we…

Pretrained language models (PLMs) have made remarkable progress in text generation tasks via fine-tuning. While, it is challenging to fine-tune PLMs in a data-scarce situation. Therefore, it is non-trivial to develop a general and…

An accurate binding affinity prediction between T-cell receptors and epitopes contributes decisively to develop successful immunotherapy strategies. Some state-of-the-art computational methods implement deep learning techniques by…

Although significant progress has been made in many tasks within the field of Natural Language Processing (NLP), Controlled Text Generation (CTG) continues to face numerous challenges, particularly in achieving fine-grained conditional…

This study evaluated Sherpa Rx, an artificial intelligence tool leveraging large language models and retrieval-augmented generation (RAG) for pharmacogenomics, to validate its performance on key response metrics. Sherpa Rx integrated…

Knowledge retrieval is one of the major challenges in building a knowledge-grounded dialogue system. A common method is to use a neural retriever with a distributed approximate nearest-neighbor database to quickly find the relevant…

Retrieval-Augmented Generation (RAG) enhances Large Language Models (LLMs) by grounding responses in external knowledge during inference. However, conventiona RAG systems under-perform on structured tabular data, largely due to coarse…

Selecting an appropriate pre-trained source model is a critical, yet computationally expensive, task in transfer learning. Model Transferability Estimation (MTE) methods address this by providing efficient proxy metrics to rank models…

Using a text description as prompt to guide the generation of text or images (e.g., GPT-3 or DALLE-2) has drawn wide attention recently. Beyond text and image generation, in this work, we explore the possibility of utilizing text…

Pre-trained Language Models (PLMs) have achieved great success on Machine Reading Comprehension (MRC) over the past few years. Although the general language representation learned from large-scale corpora does benefit MRC, the poor support…

Retrieval-Augmented Generation (RAG) enhances large language models (LLMs) by incorporating external knowledge, but its openness introduces vulnerabilities that can be exploited by poisoning attacks. Existing poisoning methods for RAG…

Retrieval-augmented generation (RAG) has emerged as a powerful framework for enhancing large language models (LLMs) with external knowledge, particularly in scientific domains that demand specialized and dynamic information. Despite its…

Retrosynthesis is the task of planning a series of chemical reactions to create a desired molecule from simpler, buyable molecules. While previous works have proposed algorithms to find optimal solutions for a range of metrics (e.g.…

The text-to-SQL task is an active challenge in Natural Language Processing. Many existing solutions focus on using black-box language models extended with specialized components within customized end-to-end text-to-SQL pipelines. While…

Text-guided molecule generation is a task where molecules are generated to match specific textual descriptions. Recently, most existing SMILES-based molecule generation methods rely on an autoregressive architecture. In this work, we…