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We consider the longest common subsequence (LCS) problem with the restriction that the common subsequence is required to consist of at least $k$ length substrings. First, we show an $O(mn)$ time algorithm for the problem which gives a…
Canonical orderings [STOC'88, FOCS'92] have been used as a key tool in graph drawing, graph encoding and visibility representations for the last decades. We study a far-reaching generalization of canonical orderings to non-planar graphs…
We present new and improved data structures that answer exact node-to-node distance queries in planar graphs. Such data structures are also known as distance oracles. For any directed planar graph on n nodes with non-negative lengths we…
In this paper, we construct several infinite families of $q$-ary constacyclic codes over a finite field $\mathbb{F}_q$ with length $n$, dimension around $n/2$, and minimum distance at least $cn/\log_q n$ for some positive constant $c$. They…
Given a graph $G = (V, E)$, we wish to compute a spanning tree whose maximum vertex degree, i.e. tree degree, is as small as possible. Computing the exact optimal solution is known to be NP-hard, since it generalizes the Hamiltonian path…
Reversible circuits have been studied extensively and intensively, and have plenty of applications in various areas, such as digital signal processing, cryptography, and especially quantum computing. In 2003, the lower bound $\Omega(2^n…
We show that the compressed suffix array and the compressed suffix tree for a string of length $n$ over an integer alphabet of size $\sigma\leq n$ can both be built in $O(n)$ (randomized) time using only $O(n\log\sigma)$ bits of working…
Pattern matching is a fundamental process in almost every scientific domain. The problem involves finding the positions of a given pattern (usually of short length) in a reference stream of data (usually of large length). The matching can…
Our input is an undirected weighted graph $G = (V,E)$ on $n$ vertices along with a source set $S\subseteq V$. The problem is to preprocess $G$ and build a compact data structure such that upon query $Qu(s,v,f)$ where $(s,v) \in S\times V$…
Motivated by computing duplication patterns in sequences, a new fundamental problem called the longest subsequence-repeated subsequence (LSRS) is proposed. Given a sequence $S$ of length $n$, a letter-repeated subsequence is a subsequence…
An upward drawing of a tree is a drawing such that no parents are below their children. It is order-preserving if the edges to children appear in prescribed order around each node. Chan showed that any tree has an upward order-preserving…
Experimental results show that, when the order $n$ is odd, there are de Bruijn sequences such that the corresponding complement sequence and the reverse sequence are the same. In this paper, we propose one efficient method to generate such…
Alphabetic codes and binary search trees are combinatorial structures that abstract search procedures in ordered sets endowed with probability distributions. In this paper, we design new linear-time algorithms to construct alphabetic codes,…
Two recent lower bounds on the compressibility of repetitive sequences, $\delta \le \gamma$, have received much attention. It has been shown that a length-$n$ string $S$ over an alphabet of size $\sigma$ can be represented within the…
We find a two term asymptotic expansion for the optimal expected value of a sequentially selected monotone subsequence from a random permutation of length n. A striking feature of this expansion is that tells us that the expected value of…
In this paper, we construct a new family of distance-optimal binary cyclic codes with the minimum distance $6$ and a new family of distance-optimal quaternary cyclic codes with the minimum distance $4$. We also construct several families of…
Cyclic codes are an interesting type of linear codes and have applications in communication and storage systems due to their efficient encoding and decoding algorithms. They have been studied for decades and a lot of progress has been made.…
Longest common extension queries (often called longest common prefix queries) constitute a fundamental building block in multiple string algorithms, for example computing runs and approximate pattern matching. We show that a sequence of $q$…
Given a set $\Pi$ of permutation patterns of length at most $k$, we present an algorithm for building $S_{\le n}(\Pi)$, the set of permutations of length at most $n$ avoiding the patterns in $\Pi$, in time $O(|S_{\le n - 1}(\Pi)| \cdot k +…
The {Congested Clique} is a distributed-computing model for single-hop networks with restricted bandwidth that has been very intensively studied recently. It models a network by an $n$-vertex graph in which any pair of vertices can…