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Correlative microscopy aims at combining two or more modalities to gain more information than the one provided by one modality on the same biological structure. Registration is needed at different steps of correlative microscopies…

Computer Vision and Pattern Recognition · Computer Science 2020-12-02 Stephan Kunne , Guillaume Potier , Jean Mérot , Perrine Paul-Gilloteaux

A fundamental goal of research in molecular biology is to understand protein structure. Protein crystallography is currently the most successful method for determining the three-dimensional (3D) conformation of a protein, yet it remains…

Artificial Intelligence · Computer Science 2014-11-17 L. Leherte , J. Glasgow , K. Baxter , E. Steeg , S. Fortier

Unlike on images, semantic learning on 3D point clouds using a deep network is challenging due to the naturally unordered data structure. Among existing works, PointNet has achieved promising results by directly learning on point sets.…

Computer Vision and Pattern Recognition · Computer Science 2018-04-05 Yiru Shen , Chen Feng , Yaoqing Yang , Dong Tian

Evaluating the (dis)similarity of crystalline, disordered and molecular compounds is a critical step in the development of algorithms to navigate automatically the configuration space of complex materials. For instance, a structural…

Materials Science · Physics 2020-02-06 Sandip De , Albert P. Bartók , Gábor Csányi , Michele Ceriotti

Matching cross-modality features between images and point clouds is a fundamental problem for image-to-point cloud registration. However, due to the modality difference between images and points, it is difficult to learn robust and…

Computer Vision and Pattern Recognition · Computer Science 2024-04-16 Haiping Wang , Yuan Liu , Bing Wang , Yujing Sun , Zhen Dong , Wenping Wang , Bisheng Yang

A multitude of measures have been proposed to quantify the similarity between protein 3-D structure. Among these measures, contact map overlap (CMO) maximization deserved sustained attention during past decade because it offers a fine…

Quantitative Methods · Quantitative Biology 2009-04-20 Rumen Andonov , Nicola Yanev , Noël Malod-Dognin

Comparing and aligning large datasets is a pervasive problem occurring across many different knowledge domains. We introduce and study MREC, a recursive decomposition algorithm for computing matchings between data sets. The basic idea is to…

Machine Learning · Statistics 2020-02-24 Andrew J. Blumberg , Mathieu Carriere , Michael A. Mandell , Raul Rabadan , Soledad Villar

Point Cloud Registration (PCR) is a fundamental and significant issue in photogrammetry and remote sensing, aiming to seek the optimal rigid transformation between sets of points. Achieving efficient and precise PCR poses a considerable…

Computer Vision and Pattern Recognition · Computer Science 2024-10-30 Rongling Zhang , Li Yan , Pengcheng Wei , Hong Xie , Pinzhuo Wang , Binbing Wang

This work addresses the problem of point cloud registration using deep neural networks. We propose an approach to predict the alignment between two point clouds with overlapping data content, but displaced origins. Such point clouds…

Computer Vision and Pattern Recognition · Computer Science 2021-01-14 Markus Horn , Nico Engel , Vasileios Belagiannis , Michael Buchholz , Klaus Dietmayer

Identification and alignment of three-dimensional folding of proteins may yield useful information about relationships too remote to be detected by conventional methods, such as sequence comparison, and may potentially lead to prediction of…

Quantitative Methods · Quantitative Biology 2017-01-10 Barış Ekim

A basic assumption of molecular biology is that proteins sharing close three-dimensional (3D) structures are likely to share a common function and in most cases derive from a same ancestor. Computing the similarity between two protein…

Quantitative Methods · Quantitative Biology 2009-02-02 Noël Malod-Dognin , Rumen Andonov , Nicola Yanev

Point cloud registration is a key task in many computational fields. Previous correspondence matching based methods require the inputs to have distinctive geometric structures to fit a 3D rigid transformation according to point-wise sparse…

Computer Vision and Pattern Recognition · Computer Science 2021-09-14 Hao Xu , Shuaicheng Liu , Guangfu Wang , Guanghui Liu , Bing Zeng

We analyze the problem of determining whether 2 given point clouds in 2D, with any distinct cardinality and any number of outliers, have subsets of the same size that can be matched via a rigid motion. This problem is important, for…

Computer Vision and Pattern Recognition · Computer Science 2019-04-17 Jorge Arce Garro , David Jiménez López

A steadily growing computational power is employed to perform molecular dynamics simulations of biological macromolecules, which represents at the same time an immense opportunity and a formidable challenge. In fact, large amounts of data…

Soft Condensed Matter · Physics 2022-05-18 Margherita Mele , Roberto Covino , Raffaello Potestio

Structural dynamics of macromolecules is critical to their structural-function relationship. Cryogenic electron microscopy (CryoEM) provides snapshots of vitrified protein at different compositional and conformational states, and the…

Quantitative Methods · Quantitative Biology 2026-01-27 Muyuan Chen , Muchen Li , Renjie Liao

This paper reports on a novel nonparametric rigid point cloud registration framework that jointly integrates geometric and semantic measurements such as color or semantic labels into the alignment process and does not require explicit data…

Computer Vision and Pattern Recognition · Computer Science 2020-12-08 Ray Zhang , Tzu-Yuan Lin , Chien Erh Lin , Steven A. Parkison , William Clark , Jessy W. Grizzle , Ryan M. Eustice , Maani Ghaffari

Highly clumped nuclei clusters captured in fluorescence in situ hybridization microscopy images are common histology entities under investigations in a wide spectrum of tissue-related biomedical investigations. Due to their large scale in…

Computer Vision and Pattern Recognition · Computer Science 2018-08-15 Xiaoyuan Guo , Hanyi Yu , Blair Rossetti , George Teodoro , Daniel Brat , Jun Kong

Registration is a fundamental but critical task in point cloud processing, which usually depends on finding element correspondence from two point clouds. However, the finding of reliable correspondence relies on establishing a robust and…

Computer Vision and Pattern Recognition · Computer Science 2022-02-16 Rong Huang , Wei Yao , Yusheng Xu , Zhen Ye , Uwe Stilla

Point cloud registration aligns multiple unposed point clouds into a common reference frame and is a core step for 3D reconstruction and robot localization without initial guess. In this work, we cast registration as conditional generation:…

Computer Vision and Pattern Recognition · Computer Science 2026-03-17 Yue Pan , Tao Sun , Liyuan Zhu , Lucas Nunes , Iro Armeni , Jens Behley , Cyrill Stachniss

The goal of this paper is to address the problem of global point cloud registration (PCR) i.e., finding the optimal alignment between point clouds irrespective of the initial poses of the scans. This problem is notoriously challenging for…

Computer Vision and Pattern Recognition · Computer Science 2024-08-15 Stefanos Pertigkiozoglou , Evangelos Chatzipantazis , Kostas Daniilidis
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