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Ecosystem approach to fisheries requires a thorough understanding of fishing impacts on ecosystem status and processes as well as predictive tools such as ecosystem models to provide useful information for management. The credibility of…

Quantitative Methods · Quantitative Biology 2024-04-30 Ricardo Oliveros-Ramos , Philippe Verley , Yunne-Jai Shin

When making predictions about ecosystems, we often have available a number of different ecosystem models that attempt to represent their dynamics in a detailed mechanistic way. Each of these can be used as simulators of large-scale…

A challenge in global change biology is to predict how species will respond to future environmental change and to manage these responses. To make such predictions and management actions robust to novel futures, we need to accurately…

Ecological forecasts are model-based statements about currently unknown ecosystem states in time or space. For a model forecast to be useful to inform decision makers, model validation and verification determine adequateness. The measure of…

Ecosystems are governed by dynamic processes such as competition for resources, reproduction and dispersal. These shape their biodiversity and how the system responds to change. Current approaches to modelling ecosystems, especially plants,…

Quantitative Methods · Quantitative Biology 2023-03-15 Claire L. Harris , Neil Brummitt , Christina A. Cobbold , Richard Reeve

Quantitative population modelling is an invaluable tool for identifying the cascading effects of ecosystem management and interventions. Ecosystem models are often constructed by assuming stability and coexistence in ecological communities…

Populations and Evolution · Quantitative Biology 2024-09-06 Sarah A. Vollert , Christopher Drovandi , Matthew P. Adams

Despite major advances in quantitative approaches to natural resource management, there has been resistance to using these tools in the actual practice of managing ecological populations. Given a managed system and a set of assumptions,…

Populations and Evolution · Quantitative Biology 2017-09-05 Matthew Holden , Stephen Ellner

Increasing pressures on the environment are generating an ever-increasing need to manage animal and plant populations sustainably, and to protect and rebuild endangered populations. Effective management requires reliable mathematical…

Methodology · Statistics 2009-09-29 Stephen T. Buckland , Ken B. Newman , Carmen Fernández , Len Thomas , John Harwood

Mathematical and statistical models underlie many of the world's most important fisheries management decisions. Since the 19th century, difficulty calibrating and fitting such models has been used to justify the selection of simple,…

Among the most relevant processes in the Earth system for human habitability are quasi-periodic, ocean-driven multi-year events whose dynamics are currently incompletely characterized by physical models, and hence poorly predictable. This…

Atmospheric and Oceanic Physics · Physics 2023-08-09 Matthew Bonas , Christopher K. Wikle , Stefano Castruccio

Ecological systems are governed by complex interactions which are mainly nonlinear. In order to capture this complexity and nonlinearity, statistical models recently gained popularity. However, although these models are commonly applied in…

Quantitative Methods · Quantitative Biology 2011-07-29 Can Ozan Tan , Uygar Ozesmi , Meryem Beklioglu , Esra Per , Bahtiyar Kurt

Modeling environmental ecosystems is essential for effective resource management, sustainable development, and understanding complex ecological processes. However, traditional methods frequently struggle with the inherent complexity,…

Machine Learning · Computer Science 2025-03-06 Runlong Yu , Shengyu Chen , Yiqun Xie , Xiaowei Jia

Bayesian methods are increasingly being applied to parameterize mechanistic process models used in environmental prediction and forecasting. In particular, models describing ecosystem dynamics with multiple states that are linear and…

Applications · Statistics 2021-10-19 John W. Smith , Leah R. Johnson , Robert Q. Thomas

Many machine learning (ML) approaches are widely used to generate bioclimatic models for prediction of geographic range of organism as a function of climate. Applications such as prediction of range shift in organism, range of invasive…

Machine Learning · Computer Science 2013-06-19 Maumita Bhattacharya

Fishing activities have broad impacts that affect, although not exclusively, the targeted stocks. These impacts affect predators and prey of the harvested species, as well as the whole ecosystem it inhabits. Ecosystem models can be used to…

Populations and Evolution · Quantitative Biology 2019-02-04 Joana P. C. Ribeiro , Bjarki Þ. Elvarsson , Erla Sturludóttir , Gunnar Stefánsson

We investigate the problem of discovering and modeling regime shifts in an ecosystem comprising multiple time series known as co-evolving time series. Regime shifts refer to the changing behaviors exhibited by series at different time…

Machine Learning · Computer Science 2022-05-16 Etienne Gael Tajeuna , Mohamed Bouguessa , Shengrui Wang

Ecosystems are complex systems, currently experiencing several threats associated with global warming, intensive exploitation, and human-driven habitat degradation. Such threats are pushing ecosystems to the brink of collapse. Because of a…

Populations and Evolution · Quantitative Biology 2017-01-02 Ricard Sole , Raul Montanez , Salva Duran-Nebreda , Daniel R. Amor , Blai Vidiella , Josep Sardanyes

One of the most critical problems we face in the study of biological systems is building accurate statistical descriptions of them. This problem has been particularly challenging because biological systems typically contain large numbers of…

Quantitative Methods · Quantitative Biology 2015-05-13 Yasser Roudi , Sheila Nirenberg , Peter Latham

Models of complex dynamical systems like the Earth's climate often involve large numbers of uncertain parameters. Comprehensive exploration of the parameter space is typically prohibitive due to excessive computational costs. Systematic…

Atmospheric and Oceanic Physics · Physics 2026-03-27 Daniel Pals , Sebastian Bathiany , Richard Wood , Joel Kuettel , Niklas Boers

Despite deep-learning being state-of-the-art for data-driven model predictions, it has not yet found frequent application in ecology. Given the low sample size typical in many environmental research fields, the default choice for the…

Applications · Statistics 2022-09-29 Marieke Wesselkamp , Niklas Moser , Maria Kalweit , Joschka Boedecker , Carsten F. Dormann
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