Related papers: Combinatorial Hubbard trees for postcritically inf…
There are several good reasons you might want to read about uniform spanning trees, one being that spanning trees are useful combinatorial objects. Not only are they fundamental in algebraic graph theory and combinatorial geometry, but they…
The invariant class under parabolic and near-parabolic renormalizations constructed by Inou and Shishikura has been proved to be extremely useful in recent years. It leads to several important progresses on the dynamics of certain…
Combinatorial trees can be used to represent genealogies of asexual individuals. These individuals can be endowed with birth and death times, to obtain a so-called `chronological tree'. In this work, we are interested in the continuum…
The history of gene families -- which are equivalent to event-labeled gene trees -- can to some extent be reconstructed from empirically estimated evolutionary event-relations containing pairs of orthologous, paralogous or xenologous genes.…
Motivated by very large-scale communication networks, we newly introduce exponentiation of graphs. Using the exponential operation on graphs, we can construct various graphs of multi-exponential order with logarithmic diameter. We show that…
Recombining trinomial trees are a workhorse for modeling discrete-event systems in option pricing, logistics, and feedback control. Because each node stores a state-dependent quantity, a depth-$D$ tree naively yields $\mathcal{O}(3^{D})$…
Graph polynomials encode fundamental combinatorial invariants of graphs. Their computation is investigated using tree and path decomposition frameworks, with formal definitions of treewidth, k-trees, and pathwidth establishing the…
We show that for any integer n and any field k of characteristic different from 2 there are at most finitely many isomorphism classes of quadratic morphisms from the projective line over k to itself with a finite postcritical orbit of size…
We construct the ordinary irreducible representations of the group of automorphisms of a finite rooted tree and we get a natural parametrization of them. To achieve this goals, we introduce and study the combinatorics of tree compositions,…
The Exponential Formula allows one to enumerate any class of combinatorial objects built by choosing a set of connected components and placing a structure on each connected component which depends only on its size. There are multiple…
We introduce a functorial construction which, from a monoid, produces a set-operad. We obtain new (symmetric or not) operads as suboperads or quotients of the operads obtained from usual monoids such as the additive and multiplicative…
We study the computation of our recently introduced Whitney polynomial and the enumeration of the spanning hypertrees for hypermaps whose hyperedges have length at most $3$. This is a class of hypermaps where the computation of the above…
There are several common ways to encode a tree as a matrix, such as the adjacency matrix, the Laplacian matrix (that is, the infinitesimal generator of the natural random walk), and the matrix of pairwise distances between leaves. Such…
In the context of reconstructing phylogenetic networks from a collection of phylogenetic trees, several characterisations and subsequently algorithms have been established to reconstruct a phylogenetic network that collectively embeds all…
This paper presents the novel `uniqueness tree' algorithm, as one possible method for determining whether two finite, undirected graphs are isomorphic. We prove that the algorithm has polynomial time complexity in the worst case, and that…
Theoretical background and an implementation of the (p)-group generation algorithm by Newman and O'Brien are used to provide computational evidence of a new type of periodically repeating patterns in pruned descendant trees of finite…
Combinatoric formulas for cluster expansions have been improved many times over the years. Here we develop some new combinatoric proofs and extensions of the tree formulas of Brydges and Kennedy, and test them on a series of pedagogical…
A little over 25 years ago Pemantle pioneered the study of the contact process on trees, and showed that on homogeneous trees the critical values $\lambda_1$ and $\lambda_2$ for global and local survival were different. He also considered…
Non-well-founded trees are used in mathematics and computer science, for modelling non-well-founded sets, as well as non-terminating processes or infinite data-structures. Categorically, they arise as final coalgebras for polynomial…
Interpreting three-leaf binary trees or {\em rooted triples} as constraints yields an entailment relation, whereby binary trees satisfying some rooted triples must also thus satisfy others, and thence a closure operator, which is known to…