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One of the key limitations of Molecular Dynamics simulations is the computational intractability of sampling protein conformational landscapes associated with either large system size or long timescales. To overcome this bottleneck, we…

Biomolecules · Quantitative Biology 2018-07-09 Zahra Shamsi , Kevin J. Cheng , Diwakar Shukla

This work describes a novel simulation approach that combines machine learning and device modelling simulations. The device simulations are based on the quantum mechanical non-equilibrium Greens function (NEGF) approach and the machine…

Computational Engineering, Finance, and Science · Computer Science 2023-09-19 Preslav Aleksandrov , Ali Rezaei , Nikolas Xeni , Tapas Dutta , Asen Asenov , Vihar Georgiev

Recently, neural heuristics based on deep reinforcement learning have exhibited promise in solving multi-objective combinatorial optimization problems (MOCOPs). However, they are still struggling to achieve high learning efficiency and…

Machine Learning · Computer Science 2023-10-25 Jinbiao Chen , Jiahai Wang , Zizhen Zhang , Zhiguang Cao , Te Ye , Siyuan Chen

We introduce a novel and efficient simulation scheme for Hawkes processes on a fixed time grid, leveraging their affine Volterra structure. The key idea is to first simulate the integrated intensity and the counting process using Inverse…

Probability · Mathematics 2025-11-18 Eduardo Abi Jaber , Elie Attal , Dimitri Sotnikov

High-level synthesis (HLS) is a design flow that leverages modern language features and flexibility, such as complex data structures, inheritance, templates, etc., to prototype hardware designs rapidly. However, exploring various design…

Hardware Architecture · Computer Science 2024-03-19 Md Rubel Ahmed , Toshiaki Koike-Akino , Kieran Parsons , Ye Wang

Sampling from high dimensional distributions is a computational bottleneck in many scientific applications. Hamiltonian Monte Carlo (HMC), and in particular the No-U-Turn Sampler (NUTS), are widely used, yet they struggle on problems with a…

Computation · Statistics 2025-05-20 Jakob Robnik , Reuben Cohn-Gordon , Uroš Seljak

Deep supervised hashing is essential for efficient storage and search in large-scale image retrieval. Traditional deep supervised hashing models generate single-length hash codes, but this creates a trade-off between efficiency and…

Computer Vision and Pattern Recognition · Computer Science 2025-06-02 Liyang He , Yuren Zhang , Rui Li , Zhenya Huang , Runze Wu , Enhong Chen

Deep Neural Networks (DNNs) excel in learning hierarchical representations from raw data, such as images, audio, and text. To compute these DNN models with high performance and energy efficiency, these models are usually deployed onto…

Memory-augmented language agents rely on embedding models for effective memory retrieval. However, existing training data construction overlooks a critical limitation: the hierarchical difficulty of negative samples and their natural…

Computation and Language · Computer Science 2026-01-22 Motong Tian , Allen P. Wong , Mingjun Mao , Wangchunshu Zhou

Coherence plays a critical role in producing a high-quality summary from a document. In recent years, neural extractive summarization is becoming increasingly attractive. However, most of them ignore the coherence of summaries when…

Computation and Language · Computer Science 2018-04-20 Yuxiang Wu , Baotian Hu

Machine learning algorithms, such as Support Vector Machine (SVM) and Deep Neural Network (DNN), have gained a lot of interests recently. When training a machine learning algorithm, randomly shuffle all the training data can improve the…

Performance · Computer Science 2018-10-11 Zhi-Lin Ke , Hsiang-Yun Cheng , Chia-Lin Yang

This work introduces a framework to address the computational complexity inherent in Mixed-Integer Programming (MIP) models by harnessing the potential of deep learning. By employing deep learning, we construct problem-specific heuristics…

Optimization and Control · Mathematics 2024-05-13 Niki Triantafyllou , Maria M. Papathanasiou

Optimization is key to solve many problems in computational biology. Global optimization methods provide a robust methodology, and metaheuristics in particular have proven to be the most efficient methods for many applications. Despite…

Optimization and Control · Mathematics 2013-11-25 Jose A Egea , David Henriques , Thomas Cokelaer , Alejandro F Villaverde , Julio R Banga , Julio Saez-Rodriguez

This work proposes a novel method through which local information about the target density can be used to construct an efficient importance sampler. The backbone of the proposed method is the Incremental Mixture Importance Sampling (IMIS)…

Computation · Statistics 2016-11-22 Matteo Fasiolo , Flávio Eler de Melo , Simon Maskell

The advent of deep learning has yielded powerful tools to automatically compute gradients of computations. This is because training a neural network equates to iteratively updating its parameters using gradient descent to find the minimum…

Data Analysis, Statistics and Probability · Physics 2023-03-01 Nathan Simpson , Lukas Heinrich

The inability of conventional electronic architectures to efficiently solve large combinatorial problems motivates the development of novel computational hardware. There has been much effort recently toward developing novel,…

The effective sample size (ESS) is widely used in sample-based simulation methods for assessing the quality of a Monte Carlo approximation of a given distribution and of related integrals. In this paper, we revisit the approximation of the…

Computation · Statistics 2022-04-14 Víctor Elvira , Luca Martino , Christian P. Robert

Full-parameter fine-tuning of large language models is constrained by substantial GPU memory requirements. Low-rank adaptation methods mitigate this challenge by updating only a subset of parameters. However, these approaches often limit…

Computation and Language · Computer Science 2026-04-10 Kaiyuan Tian , Yu Tang , Gongqingjian Jiang , Baihui Liu , Yifu Gao , Xialin Su , Linbo Qiao , Dongsheng Li

Nested sampling is a powerful approach to Bayesian inference ultimately limited by the computationally demanding task of sampling from a heavily constrained probability distribution. An effective algorithm in its own right, Hamiltonian…

Data Analysis, Statistics and Probability · Physics 2015-03-02 M. J. Betancourt

The growth of machine learning (ML) workloads has underscored the importance of efficient memory hierarchies to address bandwidth, latency, and scalability challenges. HERMES focuses on optimizing memory subsystems for RISC-V architectures…

Hardware Architecture · Computer Science 2025-03-25 Pranav Suryadevara
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