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This paper demonstrates the utility of organized numerical representations of genes in research involving flat string gene formats (i.e., FASTA/FASTQ5). FASTA/FASTQ files have several current limitations, such as their large file sizes,…

Genomics · Quantitative Biology 2023-08-11 Daniel H. Um , David A. Knowles , Gail E. Kaiser

Vector search and database systems have become a keystone component in many AI applications. While many prior research has investigated how to accelerate the performance of generic vector search, emerging AI applications require running…

Databases · Computer Science 2025-06-03 Jingyi Xi , Chenghao Mo , Benjamin Karsin , Artem Chirkin , Mingqin Li , Minjia Zhang

The Breadth-First Search (BFS) algorithm is an important building block for graph analysis of large datasets. The BFS parallelisation has been shown to be challenging because of its inherent characteristics, including irregular memory…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-04-21 Mireya Paredes , Graham Riley , Mikel Lujan

The Feature Selection Library (FSLib) introduces a comprehensive suite of feature selection (FS) algorithms for MATLAB, aimed at improving machine learning and data mining tasks. FSLib encompasses filter, embedded, and wrapper methods to…

Computer Vision and Pattern Recognition · Computer Science 2024-03-13 Giorgio Roffo

We address the problem of tuning word embeddings for specific use cases and domains. We propose a new method that automatically combines multiple domain-specific embeddings, selected from a wide range of pre-trained domain-specific…

Computation and Language · Computer Science 2019-09-06 Laura Rettig , Julien Audiffren , Philippe Cudré-Mauroux

Learnable embedding vector is one of the most important applications in machine learning, and is widely used in various database-related domains. However, the high dimensionality of sparse data in recommendation tasks and the huge volume of…

Machine Learning · Computer Science 2024-02-14 Hailin Zhang , Penghao Zhao , Xupeng Miao , Yingxia Shao , Zirui Liu , Tong Yang , Bin Cui

With the advancement of machine learning and deep learning, vector search becomes instrumental to many information retrieval systems, to search and find best matches to user queries based on their semantic similarities.These online services…

Computer Vision and Pattern Recognition · Computer Science 2018-09-13 Minjia Zhang , Yuxiong He

Information Retrieval (IR) allows the storage, management, processing and retrieval of information, documents, websites, etc. Building an IR system for any language is imperative. This is evident through the massive conducted efforts to…

Information Retrieval · Computer Science 2018-01-16 Bilal Abu-Salih

There is an increasing demand for extending existing DBMSs with vector indices so that they become unified systems capable of supporting modern predictive applications, which require joint querying of vector embeddings together with the…

Information Retrieval · Computer Science 2025-07-01 Gaurav Sehgal , Semih Salihoglu

Vector Similarity Search (VSS) in high-dimensional spaces is rapidly emerging as core functionality in next-generation database systems for numerous data-intensive services -- from embedding lookups in large language models (LLMs), to…

Information Retrieval · Computer Science 2026-01-01 Tingyang Chen , Cong Fu , Jiahua Wu , Haotian Wu , Hua Fan , Xiangyu Ke , Yunjun Gao , Yabo Ni , Anxiang Zeng

A major difficulty in applying word vector embeddings in IR is in devising an effective and efficient strategy for obtaining representations of compound units of text, such as whole documents, (in comparison to the atomic words), for the…

Information Retrieval · Computer Science 2016-06-28 Dwaipayan Roy , Debasis Ganguly , Mandar Mitra , Gareth J. F. Jones

Managing large-scale vector datasets with disk-resident graph approximate nearest neighbor search (ANNS) systems incurs substantial storage overhead due to the co-location of vector data and auxiliary index metadata, which prevents the…

Databases · Computer Science 2026-05-18 Yuanming Ren , Juncheng Zhang , Yanjing Ren , Rui Yang , Di Wu , Patrick P. C. Lee

With the development of learning-based embedding models, embedding vectors are widely used for analyzing and searching unstructured data. As vector collections exceed billion-scale, fully managed and horizontally scalable vector databases…

Embedding-based retrieval methods construct vector indices to search for document representations that are most similar to the query representations. They are widely used in document retrieval due to low latency and decent recall…

We introduce a method to provide vectorial representations of visual classification tasks which can be used to reason about the nature of those tasks and their relations. Given a dataset with ground-truth labels and a loss function defined…

Artificial intelligence (AI) is increasingly integrated into society, from financial services and traffic management to creative writing. Academic literature on the deployment of AI has mostly focused on the risks and harms that result from…

Vector embedding is a foundational building block of many deep learning models, especially in natural language processing. In this paper, we present a theoretical framework for understanding the effect of dimensionality on vector…

Machine Learning · Statistics 2018-05-22 Zi Yin

Approximate nearest neighbor (ANN) search is a performance-critical component of many machine learning pipelines. Rigorous benchmarking is essential for evaluating the performance of vector indexes for ANN search. However, the datasets of…

Machine Learning · Computer Science 2025-05-26 Elias Jääsaari , Ville Hyvönen , Matteo Ceccarello , Teemu Roos , Martin Aumüller

Vector search (VS) is now available in most database engines. However, while vector search is a common feature in AI/ML/LLMs where the dominant computing platforms are GPUs, existing database engines operate on CPUs even when implementing…

Databases · Computer Science 2026-05-18 Vasilis Mageirakos , Joel André , Marko Kabić , Bowen Wu , Yannis Chronis , Gustavo Alonso

Advances in embedding models for text, image, audio, and video drive progress across multiple domains, including retrieval-augmented generation, recommendation systems, and others. Many of these applications require an efficient method to…

Databases · Computer Science 2026-04-02 Patrick Iff , Paul Bruegger , Marcin Chrapek , David Kochergin , Maciej Besta , Torsten Hoefler
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