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Cryopreservation is beset with the challenge of protocol alignment across a wide range of cell types and process variables. By taking a cross-sectional assessment of previously published cryopreservation data (sample means and standard…

Quantitative Methods · Quantitative Biology 2014-04-08 S Sambu

A critical challenge for tumour segmentation models is the ability to adapt to diverse clinical settings, particularly when applied to poor-quality neuroimaging data. The uncertainty surrounding this adaptation stems from the lack of…

Computer Vision and Pattern Recognition · Computer Science 2023-12-20 Alyssa R. Amod , Alexandra Smith , Pearly Joubert , Confidence Raymond , Dong Zhang , Udunna C. Anazodo , Dodzi Motchon , Tinashe E. M. Mutsvangwa , Sébastien Quetin

Stable pre-training is essential for achieving better-performing language models. However, tracking pre-training stability by calculating gradient variance at every step is impractical due to the significant computational costs. We explore…

Computation and Language · Computer Science 2024-09-13 Woojin Chung , Jiwoo Hong , Na Min An , James Thorne , Se-Young Yun

In growing plant cells, parallel ordering of microtubules (MTs) along the inner surface of the cell membrane influences the direction of cell expansion and thereby plant morphology. For correct expansion of organs that primarily grow by…

Biological Physics · Physics 2019-09-05 Sven Bachmann , Richard Froese , Eric N Cytrynbaum

I revisit two theories of cell differentiation in multicellular organisms published a half-century ago, Stuart Kauffman's global gene regulatory dynamics (GGRD) model and Roy Britten's and Eric Davidson's modular gene regulatory network…

Tissues and Organs · Quantitative Biology 2019-09-10 Stuart A. Newman

We use a machine learning approach to identify the importance of microstructure characteristics in causing magnetization reversal in ideally structured large-grained Nd$_2$Fe$_{14}$B permanent magnets. The embedded Stoner-Wohlfarth method…

MicroRNAs are endogenous non-coding RNAs which negatively regulate the expression of protein-coding genes in plants and animals. They are known to play an important role in several biological processes and, together with transcription…

Molecular Networks · Quantitative Biology 2015-03-13 Matteo Osella , Carla Bosia , Davide Cora' , Michele Caselle

2-Ethyhexyl nitrate (2-EHN) is a major additive of fuel which is used to comply with the cetane number of diesel. Because of its wide use and possible accidental release, 2-EHN is a potential pollutant of the environment. In this study,…

Biomolecules · Quantitative Biology 2009-04-24 Elodie Nicolau , L. Kerhoas , Martine Lettere , Yves Jouanneau , Rémy Marchal

MiRNAs, due to their role in gene regulation, have paved a new pathway for pharmacology, focusing on drug development that targets miRNAs. However, traditional wet lab experiments are limited by efficiency and cost constraints, making it…

Machine Learning · Computer Science 2025-12-08 Ziqi Zhang

Weight decay is a simple yet powerful regularization technique that has been very widely used in training of deep neural networks (DNNs). While weight decay has attracted much attention, previous studies fail to discover some overlooked…

Machine Learning · Computer Science 2024-08-19 Zeke Xie , Zhiqiang Xu , Jingzhao Zhang , Issei Sato , Masashi Sugiyama

Protein mutations can have profound effects on biological function, making accurate prediction of property changes critical for drug discovery, protein engineering, and precision medicine. Current approaches rely on fine-tuning…

Machine Learning · Computer Science 2025-10-27 Srivathsan Badrinarayanan , Yue Su , Janghoon Ock , Alan Pham , Sanya Ahuja , Amir Barati Farimani

13C-Metabolic Flux Analysis (13C-MFA) and Flux Balance Analysis (FBA) are widely used to investigate the operation of biochemical networks in both biological and biotechnological research. Both of these methods use metabolic reaction…

Molecular Networks · Quantitative Biology 2023-03-23 Joshua A. M. Kaste , Yair Shachar-Hill

Hydrogen's role is growing as an energy carrier, increasing the need for efficient production, with methane steam reforming being the most widely used technique. This process is crucial for applications like fuel cells, where hydrogen is…

Computational Engineering, Finance, and Science · Computer Science 2025-09-16 Zofia Pizoń , Shinji Kimijima , Grzegorz Brus

Leaf wetness detection is a crucial task in agricultural monitoring, as it directly impacts the prediction and protection of plant diseases. However, existing sensing systems suffer from limitations in robustness, accuracy, and…

Computer Vision and Pattern Recognition · Computer Science 2025-07-31 Yimeng Liu , Maolin Gan , Yidong Ren , Gen Li , Jingkai Lin , Younsuk Dong , Zhichao Cao

The motion of particles through density-stratified interfaces is a common phenomenon in environmental and engineering applications. However, the mechanics of particle-stratification interactions in various combinations of particle and fluid…

Fluid Dynamics · Physics 2024-01-04 Liron Simon Keren , Teddy Lazebnik , Alex Liberzon

MicroRNAs (miRNAs) are small non-coding RNAs that regulate gene expression post-transcriptionally. They are involved in key biological processes and then may play a major role in the development of human diseases including cancer, in…

Molecular Networks · Quantitative Biology 2016-08-10 Abderrahim Chafik

Non-coding RNAs are crucial regulators of gene expression in prokaryotes and eukaryotes, but it remains poorly understood how they affect the dynamics of transcriptional networks. We analyzed the temporal characteristics of the…

Molecular Networks · Quantitative Biology 2009-11-13 Stefan Legewie , Dennis Dienst , Annegret Wilde , Hanspeter Herzel , Ilka M. Axmann

Age-related macular degeneration (AMD) is a major cause of blindness in older adults, severely affecting vision and quality of life. Despite advances in understanding AMD, the molecular factors driving the severity of subretinal scarring…

Genomics · Quantitative Biology 2024-09-10 Kuan Yan , Yue Zeng , Dai Shi , Ting Zhang , Dmytro Matsypura , Mark C. Gillies , Ling Zhu , Junbin Gao

Transfer learning through fine-tuning a pre-trained neural network with an extremely large dataset, such as ImageNet, can significantly accelerate training while the accuracy is frequently bottlenecked by the limited dataset size of the new…

Machine Learning · Computer Science 2020-05-14 Xingjian Li , Haoyi Xiong , Hanchao Wang , Yuxuan Rao , Liping Liu , Zeyu Chen , Jun Huan

Pretrained language models have been shown to exhibit biases and social stereotypes. Prior work on debiasing these models has largely focused on modifying embedding spaces during pretraining, which is not scalable for large models.…

Artificial Intelligence · Computer Science 2026-02-03 Deep Gandhi , Katyani Singh , Nidhi Hegde