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Clinical natural language processing requires methods that can address domain-specific challenges, such as complex medical terminology and clinical contexts. Recently, large language models (LLMs) have shown promise in this domain. Yet,…

Computation and Language · Computer Science 2025-01-28 Ran Xu , Hejie Cui , Yue Yu , Xuan Kan , Wenqi Shi , Yuchen Zhuang , Wei Jin , Joyce Ho , Carl Yang

Integrating structured knowledge from Knowledge Graphs (KGs) into Large Language Models (LLMs) remains a key challenge for symbolic reasoning. Existing methods mainly rely on prompt engineering or fine-tuning, which lose structural fidelity…

Machine Learning · Computer Science 2025-05-13 Erica Coppolillo

In the realm of computational knowledge representation, Knowledge Graph Reasoning (KG-R) stands at the forefront of facilitating sophisticated inferential capabilities across multifarious domains. The quintessence of this research…

Artificial Intelligence · Computer Science 2024-03-12 Chen Li , Haotian Zheng , Yiping Sun , Cangqing Wang , Liqiang Yu , Che Chang , Xinyu Tian , Bo Liu

Electronic Health Records (EHRs) and routine documentation practices play a vital role in patients' daily care, providing a holistic record of health, diagnoses, and treatment. However, complex and verbose EHR narratives overload healthcare…

Computation and Language · Computer Science 2025-02-26 Yanjun Gao , Ruizhe Li , Emma Croxford , John Caskey , Brian W Patterson , Matthew Churpek , Timothy Miller , Dmitriy Dligach , Majid Afshar

Pre-trained Language Models (PLMs) have achieved great success on Machine Reading Comprehension (MRC) over the past few years. Although the general language representation learned from large-scale corpora does benefit MRC, the poor support…

Computation and Language · Computer Science 2021-05-19 Fangkai Jiao , Yangyang Guo , Yilin Niu , Feng Ji , Feng-Lin Li , Liqiang Nie

Knowledge-enhanced language representation learning has shown promising results across various knowledge-intensive NLP tasks. However, prior methods are limited in efficient utilization of multilingual knowledge graph (KG) data for language…

Computation and Language · Computer Science 2022-10-20 Linlin Liu , Xin Li , Ruidan He , Lidong Bing , Shafiq Joty , Luo Si

Knowledge Base, represents facts about the world, often in some form of subsumption ontology, rather than implicitly, embedded in procedural code, the way a conventional computer program does. While there is a rapid growth in knowledge…

Computation and Language · Computer Science 2020-10-20 Sai Sharath Japa , Rekabdar Banafsheh

Most of the existing medicine recommendation systems that are mainly based on electronic medical records (EMRs) are significantly assisting doctors to make better clinical decisions benefiting both patients and caregivers. Even though the…

Information Retrieval · Computer Science 2020-12-01 Fang Gong , Meng Wang , Haofen Wang , Sen Wang , Mengyue Liu

Deep learning currently dominates the benchmarks for various NLP tasks and, at the basis of such systems, words are frequently represented as embeddings --vectors in a low dimensional space-- learned from large text corpora and various…

Computation and Language · Computer Science 2019-09-25 Ronald Denaux , Jose Manuel Gomez-Perez

Pre-trained neural language models bring significant improvement for various NLP tasks, by fine-tuning the models on task-specific training sets. During fine-tuning, the parameters are initialized from pre-trained models directly, which…

Computation and Language · Computer Science 2020-09-17 Chengyu Wang , Minghui Qiu , Jun Huang , Xiaofeng He

We propose a novel approach to enhancing the performance and efficiency of large language models (LLMs) by combining domain prompt routing with domain-specialized models. We introduce a system that utilizes a BERT-based router to direct…

Computation and Language · Computer Science 2024-10-11 Toby Simonds , Kemal Kurniawan , Jey Han Lau

An obstacle to scientific document understanding is the extensive use of acronyms which are shortened forms of long technical phrases. Acronym disambiguation aims to find the correct meaning of an ambiguous acronym in a given text. Recent…

Artificial Intelligence · Computer Science 2021-07-02 Qiwei Zhong , Guanxiong Zeng , Danqing Zhu , Yang Zhang , Wangli Lin , Ben Chen , Jiayu Tang

Transformer-based language models trained on large text corpora have enjoyed immense popularity in the natural language processing community and are commonly used as a starting point for downstream tasks. While these models are undeniably…

Machine Learning · Computer Science 2021-11-17 Vinitra Swamy , Angelika Romanou , Martin Jaggi

In this paper, we consider enhancing medical visual-language pre-training (VLP) with domain-specific knowledge, by exploiting the paired image-text reports from the radiological daily practice. In particular, we make the following…

Image and Video Processing · Electrical Eng. & Systems 2023-04-04 Chaoyi Wu , Xiaoman Zhang , Ya Zhang , Yanfeng Wang , Weidi Xie

Evidence-based medicine (EBM) plays a crucial role in the application of large language models (LLMs) in healthcare, as it provides reliable support for medical decision-making processes. Although it benefits from current…

Computation and Language · Computer Science 2025-03-24 Chengfeng Dou , Ying Zhang , Zhi Jin , Wenpin Jiao , Haiyan Zhao , Yongqiang Zhao , Zhengwei Tao

Transformer based pre-trained models such as BERT and its variants, which are trained on large corpora, have demonstrated tremendous success for natural language processing (NLP) tasks. Most of academic works are based on the English…

Computation and Language · Computer Science 2023-06-27 Muhammed Cihat Ünal , Betül Aygün , Aydın Gerek

Large Language Models (LLMs) are being adopted at an unprecedented rate, yet still face challenges in knowledge-intensive domains like biomedicine. Solutions such as pre-training and domain-specific fine-tuning add substantial computational…

Pretraining large neural language models, such as BERT, has led to impressive gains on many natural language processing (NLP) tasks. However, most pretraining efforts focus on general domain corpora, such as newswire and Web. A prevailing…

Computation and Language · Computer Science 2021-09-20 Yu Gu , Robert Tinn , Hao Cheng , Michael Lucas , Naoto Usuyama , Xiaodong Liu , Tristan Naumann , Jianfeng Gao , Hoifung Poon

We present EHRMIND, a practical recipe for adapting large language models (LLMs) to complex clinical reasoning tasks using reinforcement learning with verifiable rewards (RLVR). While RLVR has succeeded in mathematics and coding, its…

Computation and Language · Computer Science 2025-06-02 Jiacheng Lin , Zhenbang Wu , Jimeng Sun

Knowledge graphs are powerful tools for representing and organising complex biomedical data. Several knowledge graph embedding algorithms have been proposed to learn from and complete knowledge graphs. However, a recent study demonstrates…