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Many complex questions in biology, physics, and mathematics can be mapped to the graph isomorphism problem and the closely related graph automorphism problem. In particular, these problems appear in the context of network visualization,…

Data Structures and Algorithms · Computer Science 2012-11-14 Charo I. Del Genio , Thilo Gross

We consider homomorphisms of signed graphs from a computational perspective. In particular, we study the list homomorphism problem seeking a homomorphism of an input signed graph $(G,\sigma)$, equipped with lists $L(v) \subseteq V(H), v \in…

Combinatorics · Mathematics 2023-05-30 Jan Bok , Richard Brewster , Tomás Feder , Pavol Hell , Nikola Jedličková

A method for improving the efficiency of graph isomorphism testing is presented. The method uses the structure of the graph colored by vertex hash codes as a means of partitioning vertices into equivalence classes, which in turn reduces the…

Data Structures and Algorithms · Computer Science 2016-06-02 Thomas E. Portegys

Given two graphs $H$ and $G$, the Subgraph Isomorphism problem asks if $H$ is isomorphic to a subgraph of $G$. While NP-hard in general, algorithms exist for various parameterized versions of the problem: for example, the problem can be…

Data Structures and Algorithms · Computer Science 2013-08-27 Dániel Marx , Michał Pilipczuk

For graphs $G$ and $H$, a \emph{homomorphism} from $G$ to $H$ is an edge-preserving mapping from the vertex set of $G$ to the vertex set of $H$. For a fixed graph $H$, by \textsc{Hom($H$)} we denote the computational problem which asks…

Computational Complexity · Computer Science 2020-02-20 Karolina Okrasa , Paweł Rzążewski

The main result of this paper is that the isomorphism for omega-automatic trees of finite height is at least has hard as second-order arithmetic and therefore not analytical. This strengthens a recent result by Hjorth, Khoussainov,…

Logic in Computer Science · Computer Science 2010-04-06 Dietrich Kuske , Jiamou Liu , Markus Lohrey

We consider the task of learning Ising models when the signs of different random variables are flipped independently with possibly unequal, unknown probabilities. In this paper, we focus on the problem of robust estimation of…

Machine Learning · Statistics 2020-06-11 Ashish Katiyar , Vatsal Shah , Constantine Caramanis

The computational complexity of the isomorphism problem for regular trees, regular linear orders, and regular words is analyzed. A tree is regular if it is isomorphic to the prefix order on a regular language. In case regular languages are…

Formal Languages and Automata Theory · Computer Science 2011-02-15 Markus Lohrey , Christian Mathissen

We define a search problem on trees that closely captures the backtracking behavior of all current practical graph isomorphism algorithms. Given two trees with colored leaves, the goal is to find two leaves of matching color, one in each of…

Data Structures and Algorithms · Computer Science 2020-11-04 Markus Anders , Pascal Schweitzer

We give a new fpt algorithm testing isomorphism of $n$-vertex graphs of tree width $k$ in time $2^{k\operatorname{polylog} (k)}\operatorname{poly} (n)$, improving the fpt algorithm due to Lokshtanov, Pilipczuk, Pilipczuk, and Saurabh (FOCS…

Data Structures and Algorithms · Computer Science 2018-03-20 Martin Grohe , Daniel Neuen , Pascal Schweitzer , Daniel Wiebking

Many real world networks are considered temporal networks, in which the chronological ordering of the edges has importance to the meaning of the data. Performing temporal subgraph matching on such graphs requires the edges in the subgraphs…

Data Structures and Algorithms · Computer Science 2018-01-25 Patrick Mackey , Katherine Porterfield , Erin Fitzhenry , Sutanay Choudhury , George Chin

We solve the subgraph isomorphism problem in planar graphs in linear time, for any pattern of constant size. Our results are based on a technique of partitioning the planar graph into pieces of small tree-width, and applying dynamic…

Data Structures and Algorithms · Computer Science 2007-05-23 David Eppstein

Trigraph list homomorphism problems (also known as list matrix partition problems) have generated recent interest, partly because there are concrete problems that are not known to be polynomial time solvable or NP-complete. Thus while…

Computational Complexity · Computer Science 2010-09-03 Tomás Feder , Pavol Hell , David G. Schell , Juraj Stacho

In this paper we study a natural generalization of both {\sc $k$-Path} and {\sc $k$-Tree} problems, namely, the {\sc Subgraph Isomorphism} problem. In the {\sc Subgraph Isomorphism} problem we are given two graphs $F$ and $G$ on $k$ and $n$…

Data Structures and Algorithms · Computer Science 2009-12-15 Fedor V. Fomin , Daniel Lokshtanov , Venkatesh Raman , B. V. Raghavendra Rao , Saket Saurabh

An isomorphism between two graphs is a bijection between their vertices that preserves the edges. We consider the problem of determining whether two finite undirected weighted graphs are isomorphic, and finding an isomorphism relating them…

Optimization and Control · Mathematics 2016-11-03 Reza Takapoui , Stephen Boyd

A T-graph (a special case of a chordal graph) is the intersection graph of connected subtrees of a suitable subdivision of a fixed tree T . We deal with the isomorphism problem for T-graphs which is GI-complete in general - when T is a part…

Discrete Mathematics · Computer Science 2022-03-01 Deniz Ağaoğlu Çağırıcı , Petr Hliněný

Given an $m$-edge, undirected, weighted graph $G=(V,E,w)$, a Gomory-Hu tree $T$ (Gomory and Hu, 1961) is a tree over the vertex set $V$ such that all-pairs mincuts in $G$ are preserved exactly in $T$. In this article, we give the first…

Data Structures and Algorithms · Computer Science 2025-07-29 Amir Abboud , Rasmus Kyng , Jason Li , Debmalya Panigrahi , Maximilian Probst Gutenberg , Thatchaphol Saranurak , Weixuan Yuan , Wuwei Yuan

Our starting point is the observation that if graphs in a class C have low descriptive complexity in first order logic, then the isomorphism problem for C is solvable by a fast parallel algorithm (essentially, by a simple combinatorial…

Computational Complexity · Computer Science 2007-05-23 Martin Grohe , Oleg Verbitsky

We give practical, efficient algorithms that automatically determine the asymptotic distributed round complexity of a given locally checkable graph problem in the $[\Theta(\log n), \Theta(n)]$ region, in two settings. We present one…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-09-05 Alkida Balliu , Sebastian Brandt , Yi-Jun Chang , Dennis Olivetti , Jan Studený , Jukka Suomela

The Graph Isomorphism problem has both theoretical and practical interest. In this paper we present an algorithm, called conauto-1.2, that efficiently tests whether two graphs are isomorphic, and finds an isomorphism if they are. This…

Data Structures and Algorithms · Computer Science 2011-06-23 Jose Luis Lopez-Presa , Antonio Fernandez Anta