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The segmentation of multiple organs in multi-parametric MRI studies is critical for many applications in radiology, such as correlating imaging biomarkers with disease status (e.g., cirrhosis, diabetes). Recently, three publicly available…

Computer Vision and Pattern Recognition · Computer Science 2025-04-11 Nicole Tran , Anisa Prasad , Yan Zhuang , Tejas Sudharshan Mathai , Boah Kim , Sydney Lewis , Pritam Mukherjee , Jianfei Liu , Ronald M. Summers

Tumor segmentation in whole-body PET/CT imaging is crucial for precise disease evaluation and treatment planning. However, it remains challenging due to variability in lesion size, contrast, and anatomical distribution. Relying on manual…

Computer Vision and Pattern Recognition · Computer Science 2026-05-12 Hussain Alasmawi

Purpose: Development of a fast and fully automated deep learning pipeline (FatSegNet) to accurately identify, segment, and quantify abdominal adipose tissue on Dixon MRI from the Rhineland Study - a large prospective population-based study.…

Computer Vision and Pattern Recognition · Computer Science 2019-11-06 Santiago Estrada , Ran Lu , Sailesh Conjeti , Ximena Orozco-Ruiz , Joana Panos-Willuhn , Monique M. B Breteler , Martin Reuter

Purposes: This study aimed to develop a computed tomography (CT)-based multi-organ segmentation model for delineating organs-at-risk (OARs) in pediatric upper abdominal tumors and evaluate its robustness across multiple datasets. Materials…

We introduce a novel technique called ShapedNet to enhance body composition assessment. This method employs a deep neural network capable of estimating Body Fat Percentage (BFP), performing individual identification, and enabling…

Tumor segmentation in multimodal medical images has seen a growing trend towards deep learning based methods. Typically, studies dealing with this topic fuse multimodal image data to improve the tumor segmentation contour for a single…

Image and Video Processing · Electrical Eng. & Systems 2020-09-25 Theresa Neubauer , Maria Wimmer , Astrid Berg , David Major , Dimitrios Lenis , Thomas Beyer , Jelena Saponjski , Katja Bühler

Tumor segmentation in oncological PET is challenging, a major reason being the partial-volume effects that arise due to low system resolution and finite voxel size. The latter results in tissue-fraction effects, i.e. voxels contain a…

In this article, we present a graph-based method using a cubic template for volumetric segmentation of vertebrae in magnetic resonance imaging (MRI) acquisitions. The user can define the degree of deviation from a regular cube via a…

Computer Vision and Pattern Recognition · Computer Science 2015-06-19 Robert Schwarzenberg , Bernd Freisleben , Christopher Nimsky , Jan Egger

Cardiac segmentation of atriums, ventricles, and myocardium in computed tomography (CT) images is an important first-line task for presymptomatic cardiovascular disease diagnosis. In several recent studies, deep learning models have shown…

Image and Video Processing · Electrical Eng. & Systems 2024-10-01 Sanguk Park , Minyoung Chung

Deep neural networks have been widely adopted for automatic organ segmentation from abdominal CT scans. However, the segmentation accuracy of some small organs (e.g., the pancreas) is sometimes below satisfaction, arguably because deep…

Computer Vision and Pattern Recognition · Computer Science 2017-06-22 Yuyin Zhou , Lingxi Xie , Wei Shen , Yan Wang , Elliot K. Fishman , Alan L. Yuille

Quantification of adipose tissue (fat) from computed tomography (CT) scans is conducted mostly through manual or semi-automated image segmentation algorithms with limited efficacy. In this work, we propose a completely unsupervised and…

Computer Vision and Pattern Recognition · Computer Science 2015-12-17 Sarfaraz Hussein , Aileen Green , Arjun Watane , Georgios Papadakis , Medhat Osman , Ulas Bagci

Segmentation of skeletal muscles in Magnetic Resonance Images (MRI) is essential for the study of muscle physiology and diagnosis of muscular pathologies. However, manual segmentation of large MRI volumes is a time-consuming task. The…

Computer Vision and Pattern Recognition · Computer Science 2019-04-10 Rafael Rodrigues , Antonio M. G. Pinheiro

Body composition analysis provides valuable insights into aging, disease progression, and overall health conditions. Due to concerns of radiation exposure, two-dimensional (2D) single-slice computed tomography (CT) imaging has been used…

Computer Vision and Pattern Recognition · Computer Science 2025-01-23 Lianrui Zuo , Xin Yu , Dingjie Su , Kaiwen Xu , Aravind R. Krishnan , Yihao Liu , Shunxing Bao , Fabien Maldonado , Luigi Ferrucci , Bennett A. Landman

Fully-convolutional neural networks have achieved superior performance in a variety of image segmentation tasks. However, their training requires laborious manual annotation of large datasets, as well as acceleration by parallel processors…

Neural and Evolutionary Computing · Computer Science 2018-11-29 Blaine Rister , Darvin Yi , Kaushik Shivakumar , Tomomi Nobashi , Daniel L. Rubin

Purpose: Proximal femur image analyses based on quantitative computed tomography (QCT) provide a method to quantify the bone density and evaluate osteoporosis and risk of fracture. We aim to develop a deep-learning-based method for…

Deep learning-based image segmentation has allowed for the fully automated, accurate, and rapid analysis of musculoskeletal (MSK) structures from medical images. However, current approaches were either applied only to 2D cross-sectional…

The automatic segmentation of pathological regions within whole-body PET-CT volumes has the potential to streamline various clinical applications such as diagno-sis, prognosis, and treatment planning. This study aims to address this…

Image and Video Processing · Electrical Eng. & Systems 2024-09-24 Mehdi Astaraki , Simone Bendazzoli

This study performs a comprehensive evaluation of quantitative measurements as extracted from automated deep-learning-based segmentation methods, beyond traditional Dice Similarity Coefficient assessments, focusing on six quantitative…

Image and Video Processing · Electrical Eng. & Systems 2025-04-24 Obed Korshie Dzikunu , Amirhossein Toosi , Shadab Ahamed , Sara Harsini , Francois Benard , Xiaoxiao Li , Arman Rahmim

Robust automated organ segmentation is a prerequisite for computer-aided diagnosis (CAD), quantitative imaging analysis and surgical assistance. For high-variability organs such as the pancreas, previous approaches report undesirably low…

Computer Vision and Pattern Recognition · Computer Science 2016-03-08 Amal Farag , Le Lu , Holger R. Roth , Jiamin Liu , Evrim Turkbey , Ronald M. Summers