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We use mathematical methods from the theory of tailored random graphs to study systematically the effects of sampling on topological features of large biological signalling networks. Our aim in doing so is to increase our quantitative…

Quantitative Methods · Quantitative Biology 2011-06-02 A. Annibale , A. C. C. Coolen

Deep Neural Networks have been used in a wide variety of applications with significant success. However, their highly complex nature owing to comprising millions of parameters has lead to problems during deployment in pipelines with low…

Machine Learning · Computer Science 2022-08-15 Elvis Johnson , Xiaochen Tang , Sriramacharyulu Samudrala

We propose a multi-stage learning approach for pruning the search space of maximum clique enumeration, a fundamental computationally difficult problem arising in various network analysis tasks. In each stage, our approach learns the…

Machine Learning · Computer Science 2019-10-02 Marco Grassia , Juho Lauri , Sourav Dutta , Deepak Ajwani

Finding neural network weights that generalize well from small datasets is difficult. A promising approach is to learn a weight initialization such that a small number of weight changes results in low generalization error. We show that this…

Many complex networks depend upon biological entities for their preservation. Such entities, from human cognition to evolution, must first encode and then replicate those networks under marked resource constraints. Networks that survive are…

Physics and Society · Physics 2021-03-02 Christopher W. Lynn , Danielle S. Bassett

This paper proposes to learn high-performance deep ConvNets with sparse neural connections, referred to as sparse ConvNets, for face recognition. The sparse ConvNets are learned in an iterative way, each time one additional layer is…

Computer Vision and Pattern Recognition · Computer Science 2015-12-08 Yi Sun , Xiaogang Wang , Xiaoou Tang

We investigate the searchability of complex systems in terms of their interconnectedness. Associating searchability with the number and size of branch points along the paths between the nodes, we find that scale-free networks are relatively…

Disordered Systems and Neural Networks · Physics 2007-05-23 M. Rosvall , A. Gronlund , P. Minnhagen , K. Sneppen

Many real-world complex networks actually have a bipartite nature: their nodes may be separated into two classes, the links being between nodes of different classes only. Despite this, and despite the fact that many ad-hoc tools have been…

Statistical Mechanics · Physics 2007-05-23 Matthieu Latapy , Clemence Magnien , Nathalie Del Vecchio

Even though probabilistic treatments of neural networks have a long history, they have not found widespread use in practice. Sampling approaches are often too slow already for simple networks. The size of the inputs and the depth of typical…

Computer Vision and Pattern Recognition · Computer Science 2018-05-30 Jochen Gast , Stefan Roth

To learn (statistical) dependencies among random variables requires exponentially large sample size in the number of observed random variables if any arbitrary joint probability distribution can occur. We consider the case that sparse data…

Machine Learning · Computer Science 2007-05-23 Dominik Janzing , Daniel Herrmann

Network pruning is a commonly used measure to alleviate the storage and computational burden of deep neural networks. However, the fundamental limit of network pruning is still lacking. To close the gap, in this work we'll take a…

Machine Learning · Statistics 2025-10-20 Qiaozhe Zhang , Ruijie Zhang , Jun Sun , Yingzhuang Liu

In this paper, we consider the problem of assessing local clustering in complex networks. Various definitions for this measure have been proposed for the cases of networks having weighted edges, but less attention has been paid to both…

Physics and Society · Physics 2017-12-21 Gian Paolo Clemente , Rosanna Grassi

Empirical networks of weighted dyadic relations often contain noisy edges that alter the global characteristics of the network and obfuscate the most important structures therein. Graph pruning is the process of identifying the most…

Physics and Society · Physics 2016-01-20 Navid Dianati

We provide a framework for modeling social network formation through conditional multinomial logit models from discrete choice and random utility theory, in which each new edge is viewed as a "choice" made by a node to connect to another…

Social and Information Networks · Computer Science 2020-05-22 Jan Overgoor , Austin R. Benson , Johan Ugander

In this paper, we provide new complexity results for algorithms that learn discrete-variable Bayesian networks from data. Our results apply whenever the learning algorithm uses a scoring criterion that favors the simplest model able to…

Machine Learning · Computer Science 2012-12-12 David Maxwell Chickering , Christopher Meek , David Heckerman

Link prediction -- a task of distinguishing actual hidden edges from random unconnected node pairs -- is one of the quintessential tasks in graph machine learning. Despite being widely accepted as a universal benchmark and a downstream task…

Social and Information Networks · Computer Science 2024-05-30 Rachith Aiyappa , Xin Wang , Munjung Kim , Ozgur Can Seckin , Jisung Yoon , Yong-Yeol Ahn , Sadamori Kojaku

The proliferation of models for networks raises challenging problems of model selection: the data are sparse and globally dependent, and models are typically high-dimensional and have large numbers of latent variables. Together, these…

Social and Information Networks · Computer Science 2014-06-25 Xiaoran Yan , Cosma Rohilla Shalizi , Jacob E. Jensen , Florent Krzakala , Cristopher Moore , Lenka Zdeborova , Pan Zhang , Yaojia Zhu

Network growth as described by the Duplication-Divergence model proposes a simple general idea for the evolution dynamics of natural networks. In particular it is an alternative to the well known Barab\'asi-Albert model when applied to…

This article discusses the properties of extremes of degree sequences calculated from network data. We introduce the notion of a normalized degree, in order to permit a comparison of degree sequences between networks with differing numbers…

Methodology · Statistics 2012-10-17 Sofia C. Olhede , Patrick J. Wolfe

Compressing deep networks is essential to expand their range of applications to constrained settings. The need for compression however often arises long after the model was trained, when the original data might no longer be available. On…

Machine Learning · Computer Science 2022-01-19 Jean-Michel Begon , Pierre Geurts