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In array-based DNA synthesis, multiple strands of DNA are synthesized in parallel to reduce the time cost from the sum of their lengths to the length their shortest common supersequences. To maximize the amount of information that can be…

Information Theory · Computer Science 2024-05-29 Hsin-Po Wang , Chi-Wei Chin

A superpermutation is a sequence that contains every permutation of $n$ distinct symbols as a contiguous substring. For instance, a valid example for three symbols is a sequence that contains all six permutations. This paper introduces a…

Discrete Mathematics · Computer Science 2025-05-19 Dhruv Ajmera

We investigate a signed version of the Hammersley process, a discrete process on words related to a property of integer sequences called heapability (Byers et al., ANALCO 2011). The specific version that we investigate corresponds to a…

Combinatorics · Mathematics 2024-06-25 Gabriel Istrate

Continued fractions are linked to Stern's diatomic sequence 0,1,1,2,1,3,2,3,1,4,... (given by the recursion relation a_2n=a_n and a_{2n+1} = a_n + a_{n+1}, where a_0=0 and a_1=1), which has long been known. Using a particular…

Combinatorics · Mathematics 2013-09-12 Thomas Garrity

We fully classify automatic sequences $a$ over a finite alphabet $\Omega$ with the property that each word over $\Omega$ appears is $a$ along an arithmetic progression. Using the terminology introduced by Avgustinovich, Fon-Der-Flaass and…

Number Theory · Mathematics 2024-02-08 Jakub Konieczny , Clemens Müllner

In this paper, we develop a structure theory for generalized spectral sequences, which are derived from chain complexes that are filtered over arbitrary partially ordered sets. Also, a more general construction method reminiscent of exact…

Algebraic Topology · Mathematics 2022-03-21 Benjamin Matschke

We analyse preference inference, through consistency, for general preference languages based on lexicographic models. We identify a property, which we call strong compositionality, that applies for many natural kinds of preference…

Logic in Computer Science · Computer Science 2024-11-01 Nic Wilson , Anne-Marie George

For Lucas sequences of the first kind (u_n) and second kind (v_n) defined as usual for positive n by u_n=(a^n-b^n)/(a-b), v_n=a^n+b^n, where a and b are either integers or conjugate quadratic integers, we describe the set of indices n for…

Number Theory · Mathematics 2009-08-27 Chris Smyth

For an arbitrary finite set S of natural numbers greater 1, we construct an integer-valued polynomial f, whose set of lengths in Int(Z) is S. The set of lengths of f is the set of all natural numbers n, such that f has a factorization as a…

Rings and Algebras · Mathematics 2014-09-04 Sophie Frisch

We characterize complete deterministic finite automata with two input letters in which every non-empty set of states occurs as the image of the whole state set under the action of a suitable input word. The characterization leads to a…

Formal Languages and Automata Theory · Computer Science 2022-08-23 David Casas , Mikhail V. Volkov

It has been proved that to implement a linearizable shared memory in synchronous message-passing systems it is necessary to wait for a time proportional to the uncertainty in the latency of the network for both read and write operations,…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-08-01 Matthieu Perrin , Matoula Petrolia , Achour Mostefaoui , Claude Jard

Recent language models, especially those based on recurrent neural networks (RNNs), make it possible to generate natural language from a learned probability. Language generation has wide applications including machine translation,…

Computation and Language · Computer Science 2016-01-05 Lili Mou , Rui Yan , Ge Li , Lu Zhang , Zhi Jin

This paper introduces a convenient strategy for coding and predicting sequences of independent, identically distributed random variables generated from a large alphabet of size $m$. In particular, the size of the sample is allowed to be…

Information Theory · Computer Science 2014-01-17 Xiao Yang , Andrew R. Barron

We study compositions whose parts are colored by subsequences of the Fibonacci numbers. We give explicit bijections between Fibonacci colored compositions and several combinatorial objects, including certain restricted ternary and…

Combinatorics · Mathematics 2022-03-15 Juan B. Gil , Jessica A. Tomasko

A single coloring channel is defined by a subset of letters it allows to pass through, while deleting all others. A sequence of coloring channels provides multiple views of the same transmitted letter sequence, forming a type of…

Information Theory · Computer Science 2026-04-10 Wenjun Yu , Moshe Schwartz

Tandem duplication is an evolutionary process whereby a segment of DNA is replicated and proximally inserted. The different configurations that can arise from this process give rise to some interesting combinatorial questions. Firstly, we…

Combinatorics · Mathematics 2016-11-25 L Penso-Dolfin , CD Greenman

Unsupervised constituency parsing focuses on identifying word sequences that form a syntactic unit (i.e., constituents) in target sentences. Linguists identify the constituent by evaluating a set of Predicate-Argument Structure (PAS)…

Computation and Language · Computer Science 2024-08-13 Junjie Chen , Xiangheng He , Danushka Bollegala , Yusuke Miyao

We wish to estimate the total number of classes in a population based on sample counts, especially in the presence of high latent diversity. Drawing on probability theory that characterizes distributions on the integers by ratios of…

Methodology · Statistics 2014-12-10 A. Willis , J. Bunge

Filtered Poisson processes are often used as reference models for intermittent fluc- tuations in physical systems. Such a process is here extended by adding a noise term, either as a purely additive term to the process or as a dynamical…

Data Analysis, Statistics and Probability · Physics 2018-05-04 Audun Theodorsen , Odd Erik Garcia , Martin Rypdal

In this work we present a model for computation of random processes in digital computers which solves the problem of periodic sequences and hidden errors produced by correlations. We show that systems with non-invertible non-linearities can…

Statistical Mechanics · Physics 2007-05-23 Monica A. Garcia-Nustes , Leonardo Trujillo , Jorge A. Gonzalez