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Given only a set of images, neural implicit surface representation has shown its capability in 3D surface reconstruction. However, as the nature of per-scene optimization is based on the volumetric rendering of color, previous neural…

Computer Vision and Pattern Recognition · Computer Science 2023-03-02 Jing Li , Jinpeng Yu , Ruoyu Wang , Zhengxin Li , Zhengyu Zhang , Lina Cao , Shenghua Gao

Standard deviation measurements of intensity profiles of stationary single fluorescent molecules are useful for studying axial localization, molecular orientation, and a fluorescence imaging system's spatial resolution. Here we report on…

Quantitative Methods · Quantitative Biology 2015-05-13 Michael C. DeSantis , Shawn H. DeCenzo , Je-Luen Li , Y. M. Wang

Purpose: Surgical scene understanding plays a critical role in the technology stack of tomorrow's intervention-assisting systems in endoscopic surgeries. For this, tracking the endoscope pose is a key component, but remains challenging due…

Computer Vision and Pattern Recognition · Computer Science 2023-04-18 Michel Hayoz , Christopher Hahne , Mathias Gallardo , Daniel Candinas , Thomas Kurmann , Maximilian Allan , Raphael Sznitman

Foundation models provide robust embeddings for diverse tasks, including medical imaging. We evaluate embeddings from seven general and medical-specific foundation models (e.g., DenseNet121, BiomedCLIP, MedImageInsight, Rad-DINO,…

As with many machine learning problems, the progress of image generation methods hinges on good evaluation metrics. One of the most popular is the Frechet Inception Distance (FID). FID estimates the distance between a distribution of…

Computer Vision and Pattern Recognition · Computer Science 2024-01-29 Sadeep Jayasumana , Srikumar Ramalingam , Andreas Veit , Daniel Glasner , Ayan Chakrabarti , Sanjiv Kumar

Single-cell RNA sequencing (scRNA-seq), especially temporally resolved datasets, enables genome-wide profiling of gene expression dynamics at single-cell resolution across discrete time points. However, current technologies provide only…

Genomics · Quantitative Biology 2025-11-19 Yue Ling , Peiqi Zhang , Zhenyi Zhang , Peijie Zhou

Purpose: Real time monitoring of dynamic magnetic fields has recently become a commercially available option for measuring MRI k-space trajectories and magnetic fields induced by eddy currents in real time. However, for accurate image…

Medical Physics · Physics 2022-05-30 Paul I. Dubovan , Corey A. Baron

Studying the solar system and especially the Sun relies on the data gathered daily from space missions. These missions are data-intensive and compressing this data to make them efficiently transferable to the ground station is a twofold…

Fifth-generation (5G) cellular networks promise higher data rates, lower latency, and large numbers of interconnected devices. Thereby, 5G will provide important steps towards unlocking the full potential of the Internet of Things (IoT). In…

Signal Processing · Electrical Eng. & Systems 2021-07-30 Nicolai Spicher , Arne Klingenberg , Valentin Purrucker , Thomas M. Deserno

X-ray interaction with matter is an energy-dependent process that is contingent on the atomic structure of the constituent material elements. The most advanced models to capture this relationship currently rely on Monte Carlo (MC)…

Machine Learning · Computer Science 2023-07-11 Raziye Kubra Kumrular , Thomas Blumensath

Sensor fusion has become a popular topic in robotics. However, conventional fusion methods encounter many difficulties, such as data representation differences, sensor variations, and extrinsic calibration. For example, the calibration…

Computer Vision and Pattern Recognition · Computer Science 2023-08-29 Shuyi Zhou , Shuxiang Xie , Ryoichi Ishikawa , Ken Sakurada , Masaki Onishi , Takeshi Oishi

Motion estimation by fusing data from at least a camera and an Inertial Measurement Unit (IMU) enables many applications in robotics. However, among the multitude of Visual Inertial Odometry (VIO) methods, few efficiently estimate device…

Robotics · Computer Science 2021-01-05 Jianzhu Huai , Yukai Lin , Charles Toth , Yuan Zhuang , Dong Chen

NASA's Solar Dynamics Observatory (SDO) mission collects extensive data to monitor the Sun's daily activity. In the realm of space mission design, data compression plays a crucial role in addressing the challenges posed by limited telemetry…

Image and Video Processing · Electrical Eng. & Systems 2024-07-23 Atefeh Khoshkhahtinat , Ali Zafari , Piyush M. Mehta , Nasser M. Nasrabadi , Barbara J. Thompson , Michael S. F. Kirk , Daniel da Silva

The compression of real-world scanned 3D human dynamic meshes is an emerging research area, driven by applications such as telepresence, virtual reality, and 3D digital streaming. Unlike synthesized dynamic meshes with fixed topology,…

Computer Vision and Pattern Recognition · Computer Science 2025-07-04 Huong Hoang , Truong Nguyen , Pamela Cosman

The statistical properties of the density map (DM) approach to counting microbiological objects on images are studied in detail. The DM is given by U$^2$-Net. Two statistical methods for deep neural networks are utilized: the bootstrap and…

Computer Vision and Pattern Recognition · Computer Science 2022-07-07 Krzysztof M. Graczyk , Jaroslaw Pawlowski , Sylwia Majchrowska , Tomasz Golan

Implicit Neural Representations (INRs) offer exceptional fidelity for video compression by learning per-video optimized functions, but their adoption is crippled by impractically slow encoding times. Existing attempts to accelerate INR…

Computer Vision and Pattern Recognition · Computer Science 2025-07-01 Vikram Rangarajan , Shishira Maiya , Max Ehrlich , Abhinav Shrivastava

The dynamics of biomolecules are crucial for our understanding of their functioning in living systems. However, current 3D imaging techniques, such as cryogenic electron microscopy (cryo-EM), require freezing the sample, which limits the…

Quantitative Methods · Quantitative Biology 2023-08-24 Enze Ye , Yuhang Wang , Hong Zhang , Yiqin Gao , Huan Wang , He Sun

Image registration is an essential step in many medical image analysis tasks. Traditional methods for image registration are primarily optimization-driven, finding the optimal deformations that maximize the similarity between two images.…

Computer Vision and Pattern Recognition · Computer Science 2024-10-14 Shanlin Sun , Kun Han , Chenyu You , Hao Tang , Deying Kong , Junayed Naushad , Xiangyi Yan , Haoyu Ma , Pooya Khosravi , James S. Duncan , Xiaohui Xie

Analysis of microscopy images can provide insight into many biological processes. One particularly challenging problem is cell nuclear segmentation in highly anisotropic and noisy 3D image data. Manually localizing and segmenting each and…

Computer Vision and Pattern Recognition · Computer Science 2013-09-18 Christian Widmer , Philipp Drewe , Xinghua Lou , Shefali Umrania , Stephanie Heinrich , Gunnar Rätsch

We present a new instance segmentation approach tailored to biological images, where instances may correspond to individual cells, organisms or plant parts. Unlike instance segmentation for user photographs or road scenes, in biological…

Computer Vision and Pattern Recognition · Computer Science 2020-04-24 Victor Kulikov , Victor Lempitsky