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A one dimensional stochastic exclusion process with two species of particles, $+$ and $-$, is studied where density of each species can fluctuate but the total particle density is conserved. From the exact stationary state weights we show…

Statistical Mechanics · Physics 2017-01-10 Urna Basu

Transitions between solid-like and fluid-like states in living tissues have been found in steps of embryonic development and in stages of disease progression. Our current understanding of these transitions has been guided by experimental…

Soft Condensed Matter · Physics 2024-11-20 Steven J. Chisolm , Emily Guo , Vignesh Subramaniam , Kyle D. Schulze , Thomas E. Angelini

We numerically study the dynamics of run-and-tumble particles confined in two chambers connected by thin channels. Two dominant dynamical behaviors emerge: (i) an oscillatory pumping state, in which particles periodically fill the two…

Soft Condensed Matter · Physics 2015-11-04 M. Paoluzzi , R. Di Leonardo , L. Angelani

The impact of confinement on self-assembly of particles interacting with short-range attraction and long-range repulsion (SALR) potential is studied for thermodynamic states corresponding to local ordering of clusters or layers in the bulk.…

Soft Condensed Matter · Physics 2014-11-17 Jakub Pękalski , Alina Ciach , Noé G. Almarza

Recent studies in the collective behavior of active colloids have shown that a global polar order may emerge due to long-ranged chemo-repulsive interactions between them. Here, we report the role of pinning disorder in the flocking…

Soft Condensed Matter · Physics 2026-03-02 Sagarika Adhikary , Arvin Gopal Subramaniam , Rajesh Singh

The two-state Togashi-Kaneko model demonstrates how, at finite system sizes, autocatalysis can lead to noise-induced bistability between the cellular concentrations of different molecular species. Here, we show that, in the biologically…

Statistical Mechanics · Physics 2025-07-09 Jeremy R. Worsfold , Richard G. Morris

Micro-swimmers can serve as cargo carriers that move deep inside complex flow networks. When a school collectively entrains the surrounding fluid, their transport capacity can be enhanced. This effect is quantified with good agreement…

Soft Condensed Matter · Physics 2021-08-26 Chenyu Jin , Yibo Chen , Corinna C. Maass , Arnold J. T. M. Mathijssen

We study the effects of animal social networks with a weighted pattern of interactions on the flocking transition exhibited by models of self-organized collective motion. Considering a model representing dynamics on a one-dimensional…

Physics and Society · Physics 2022-10-19 Jaume Ojer , Romualdo Pastor-Satorras

In the cell, protein complexes form relying on specific interactions between their monomers. Excluded volume effects due to molecular crowding would lead to correlations between molecules even without specific interactions. What is the…

Soft Condensed Matter · Physics 2015-05-13 Wei Wang , Wei-Xin Xu , Y. Levy , E. Trizac , P. G. Wolynes

Bacterial colonies are a well-known example of living active matter, exhibiting collective behaviors such as nematic alignment and collective motion that play an important role in the spread of microbial infections. While the underlying…

Animals form groups for many reasons but there are costs and benefit associated with group formation. One of the benefits is collective memory. In groups on the move, social interactions play a crucial role in the cohesion and the ability…

Quantitative Methods · Quantitative Biology 2014-03-24 Giancarlo De Luca , Patrizio Mariani , Brian R. MacKenzie , Matteo Marsili

A striking feature of the collective behavior of spherical microswimmers is that for sufficiently strong self-propulsion they phase-separate into a dense cluster coexisting with a low-density dis- ordered surrounding. Extending our previous…

Soft Condensed Matter · Physics 2016-10-31 Johannes Blaschke , Maurice Maurer , Karthik Menon , Andreas Zöttl , Holger Stark

Microorganisms ofter move in confined, disordered environments, where hydrodynamic couplings can modify their transport behavior. Using extensive finite-element simulations, we investigate the dynamics of microswimmers -- modeled as…

Soft Condensed Matter · Physics 2026-03-24 Mirko Residori , Sebastian Aland , Christina Kurzthaler

We introduce a minimal model for a collection of self-propelled apolar active particles, also called as `active nematic', on a two-dimensional substrate and study the order-disorder transition with the variation of density. The particles…

Statistical Mechanics · Physics 2015-09-18 Rakesh Das , Manoranjan Kumar , Shradha Mishra

Insulating quantum spin liquids can undergo a confinement transition to a valence bond solid state via the condensation of topological excitations of the associated gauge theory. We extend the theory of such transitions to fractionalized…

Strongly Correlated Electrons · Physics 2016-04-26 Aavishkar A. Patel , Debanjan Chowdhury , Andrea Allais , Subir Sachdev

We use linear stability analysis and hybrid lattice Boltzmann simulations to study the dynamical behaviour of an active nematic confined in a channel made of viscoelastic material. We find that the quiescent, ordered active nematic is…

Soft Condensed Matter · Physics 2023-12-20 Francesco Mori , Saraswat Bhattacharyya , Julia M. Yeomans , Sumesh P. Thampi

We use a phase-field model to study the effect of confinement on dendritic growth, in a pure material solidifying in an undercooled melt, and in the directional solidification of a dilute binary alloy. Specifically, we observe the effect of…

Materials Science · Physics 2007-05-23 Badrinarayan P. Athreya , Jonathan A. Dantzig , Shan Liu , Rohit Trivedi

The transition between low and high density phases is a typical feature of systems with social interactions. This contribution focuses on simple evacuation design of one room with one entrance and one exit; four passing-through experiments…

Multiagent Systems · Computer Science 2016-01-27 Marek Bukáček , Pavel Hrabák , Milan Krbálek

Dense suspensions of self-propelled rod-like particles exhibit a fascinating variety of non-equilibrium phenomena. By means of computer simulations of a minimal model for rigid self-propelled colloidal rods with variable shape we explore…

Soft Condensed Matter · Physics 2015-06-04 H. H. Wensink , H. Löwen

We explore the microstructure and phase behavior of confined soft colloids which can actively switch their interactions at a predefined kinetic rate. For this, we employ a reaction-diffusion approach based on a reactive dynamical…

Soft Condensed Matter · Physics 2020-08-19 Arturo Moncho-Jordá , Joachim Dzubiella