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Modern generative modeling methods have demonstrated strong performance in learning complex data distributions from clean samples. In many scientific and imaging applications, however, clean samples are unavailable, and only noisy or…

Machine Learning · Computer Science 2026-05-29 Willem Diepeveen , Oscar Leong

Graph Neural Networks (GNNs) have become widely-used models for semi-supervised learning. However, the robustness of GNNs in the presence of label noise remains a largely under-explored problem. In this paper, we consider an important yet…

Machine Learning · Computer Science 2023-02-28 Siyi Qian , Haochao Ying , Renjun Hu , Jingbo Zhou , Jintai Chen , Danny Z. Chen , Jian Wu

We consider the explanation problem of Graph Neural Networks (GNNs). Most existing GNN explanation methods identify the most important edges or nodes but fail to consider substructures, which are more important for graph data. The only…

Machine Learning · Computer Science 2023-02-28 Zhaoning Yu , Hongyang Gao

The goal of graph representation learning is to embed each vertex in a graph into a low-dimensional vector space. Existing graph representation learning methods can be classified into two categories: generative models that learn the…

Machine Learning · Computer Science 2017-11-23 Hongwei Wang , Jia Wang , Jialin Wang , Miao Zhao , Weinan Zhang , Fuzheng Zhang , Xing Xie , Minyi Guo

Graph Neural Networks usually rely on the assumption that the graph topology is available to the network as well as optimal for the downstream task. Latent graph inference allows models to dynamically learn the intrinsic graph structure of…

Machine Learning · Computer Science 2023-06-28 Haitz Sáez de Ocáriz Borde , Anees Kazi , Federico Barbero , Pietro Liò

Graph foundation models (GFMs), pretrained on massive graph data, have transformed graph machine learning by supporting general-purpose reasoning across diverse graph tasks and domains. Existing GFMs pretrained with fixed-hop subgraph…

Machine Learning · Computer Science 2026-05-12 Haokun Liu , Zezhong Ding , Xike Xie

Unsupervised graph representation learning aims to learn low-dimensional node embeddings without supervision while preserving graph topological structures and node attributive features. Previous graph neural networks (GNN) require a large…

Machine Learning · Computer Science 2020-09-04 Yanqiao Zhu , Yichen Xu , Feng Yu , Shu Wu , Liang Wang

Generative graph models create instances of graphs that mimic the properties of real-world networks. Generative models are successful at retaining pairwise associations in the underlying networks but often fail to capture higher-order…

Social and Information Networks · Computer Science 2019-11-14 Anuththari Gamage , Eli Chien , Jianhao Peng , Olgica Milenkovic

Predicting molecular properties with data-driven methods has drawn much attention in recent years. Particularly, Graph Neural Networks (GNNs) have demonstrated remarkable success in various molecular generation and prediction tasks. In…

Quantitative Methods · Quantitative Biology 2021-10-19 Zaixi Zhang , Qi Liu , Hao Wang , Chengqiang Lu , Chee-Kong Lee

Graph neural networks (GNNs) have excelled in various graph learning tasks, particularly node classification. However, their performance is often hampered by noisy measurements in real-world graphs, which can corrupt critical patterns in…

Machine Learning · Computer Science 2025-03-14 Shuyi Chen , Kaize Ding , Shixiang Zhu

Due to a huge volume of information in many domains, the need for classification methods is imperious. In spite of many advances, most of the approaches require a large amount of labeled data, which is often not available, due to costs and…

Computer Vision and Pattern Recognition · Computer Science 2023-04-26 Lucas Pascotti Valem , Daniel Carlos Guimarães Pedronette , Longin Jan Latecki

Diffusion and flow models have become the dominant paradigm for generative modeling on Riemannian manifolds, with successful applications in protein backbone generation and DNA sequence design. However, these methods require tens to…

Machine Learning · Computer Science 2026-05-04 Dongyeop Woo , Marta Skreta , Seonghyun Park , Kirill Neklyudov , Sungsoo Ahn

Many tasks require mapping continuous input data (e.g. images) to discrete task outputs (e.g. class labels). Yet, how neural networks learn to perform such discrete computations on continuous data manifolds remains poorly understood. Here,…

Machine Learning · Computer Science 2025-12-02 Julian Brandon , Angus Chadwick , Arthur Pellegrino

Pretrained (language) embeddings are versatile, task-agnostic feature representations of entities, like words, that are central to many machine learning applications. These representations can be enriched through retrofitting, a class of…

Machine Learning · Computer Science 2020-10-13 Justin Dieter , Arun Tejasvi Chaganty

Graph-level anomaly detection is significant in diverse domains. To improve detection performance, counterfactual graphs have been exploited to benefit the generalization capacity by learning causal relations. Most existing studies directly…

Machine Learning · Computer Science 2024-07-19 Chunjing Xiao , Shikang Pang , Wenxin Tai , Yanlong Huang , Goce Trajcevski , Fan Zhou

Recent years have witnessed a surge of interest in machine learning on graphs and networks with applications ranging from vehicular network design to IoT traffic management to social network recommendations. Supervised machine learning…

Social and Information Networks · Computer Science 2019-08-23 Manoj Reddy Dareddy , Mahashweta Das , Hao Yang

Existing defenses against adversarial attacks are typically tailored to a specific perturbation type. Using adversarial training to defend against multiple types of perturbation requires expensive adversarial examples from different…

Cryptography and Security · Computer Science 2020-10-16 Jay Nandy , Wynne Hsu , Mong Li Lee

The foundation model has heralded a new era in artificial intelligence, pretraining a single model to offer cross-domain transferability on different datasets. Graph neural networks excel at learning graph data, the omnipresent…

Machine Learning · Computer Science 2025-04-09 Li Sun , Zhenhao Huang , Suyang Zhou , Qiqi Wan , Hao Peng , Philip Yu

Graph neural networks (GNNs) have become the dominant solution for learning on graphs, the typical non-Euclidean structures. Conventional GNNs, constructed with the Artificial Neuron Network (ANN), have achieved impressive performance at…

Machine Learning · Computer Science 2024-10-24 Li Sun , Zhenhao Huang , Qiqi Wan , Hao Peng , Philip S. Yu

Conjugate gradient (CG) methods are widely acknowledged as efficient for minimizing continuously differentiable functions in Euclidean spaces. In recent years, various CG methods have been extended to Riemannian manifold optimization, but…

Optimization and Control · Mathematics 2026-05-26 Chunming Tang , Shaohui Liang , Huangyue Chen