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Scientific Workflow Systems (SWSs) are advanced software frameworks that drive modern research by orchestrating complex computational tasks and managing extensive data pipelines. These systems offer a range of essential features, including…

Software Engineering · Computer Science 2025-06-26 Khairul Alam , Banani Roy , Chanchal K. Roy , Kartik Mittal

Scientific Large Language Models (Sci-LLMs) are transforming how knowledge is represented, integrated, and applied in scientific research, yet their progress is shaped by the complex nature of scientific data. This survey presents a…

Computation and Language · Computer Science 2025-10-21 Ming Hu , Chenglong Ma , Wei Li , Wanghan Xu , Jiamin Wu , Jucheng Hu , Tianbin Li , Guohang Zhuang , Jiaqi Liu , Yingzhou Lu , Ying Chen , Chaoyang Zhang , Cheng Tan , Jie Ying , Guocheng Wu , Shujian Gao , Pengcheng Chen , Jiashi Lin , Haitao Wu , Lulu Chen , Fengxiang Wang , Yuanyuan Zhang , Xiangyu Zhao , Feilong Tang , Encheng Su , Junzhi Ning , Xinyao Liu , Ye Du , Changkai Ji , Pengfei Jiang , Cheng Tang , Ziyan Huang , Jiyao Liu , Jiaqi Wei , Yuejin Yang , Xiang Zhang , Guangshuai Wang , Yue Yang , Huihui Xu , Ziyang Chen , Yizhou Wang , Chen Tang , Jianyu Wu , Yuchen Ren , Siyuan Yan , Zhonghua Wang , Zhongxing Xu , Shiyan Su , Shangquan Sun , Runkai Zhao , Zhisheng Zhang , Dingkang Yang , Jinjie Wei , Jiaqi Wang , Jiahao Xu , Jiangtao Yan , Wenhao Tang , Hongze Zhu , Yu Liu , Fudi Wang , Yiqing Shen , Yuanfeng Ji , Yanzhou Su , Tong Xie , Hongming Shan , Chun-Mei Feng , Zhi Hou , Diping Song , Lihao Liu , Yanyan Huang , Lequan Yu , Bin Fu , Shujun Wang , Xiaomeng Li , Xiaowei Hu , Yun Gu , Ben Fei , Benyou Wang , Yuewen Cao , Minjie Shen , Jie Xu , Haodong Duan , Fang Yan , Hongxia Hao , Jielan Li , Jiajun Du , Yanbo Wang , Imran Razzak , Zhongying Deng , Chi Zhang , Lijun Wu , Conghui He , Zhaohui Lu , Jinhai Huang , Wenqi Shao , Yihao Liu , Siqi Luo , Yi Xin , Xiaohong Liu , Fenghua Ling , Yuqiang Li , Aoran Wang , Siqi Sun , Qihao Zheng , Nanqing Dong , Tianfan Fu , Dongzhan Zhou , Yan Lu , Wenlong Zhang , Jin Ye , Jianfei Cai , Yirong Chen , Wanli Ouyang , Yu Qiao , Zongyuan Ge , Shixiang Tang , Junjun He , Chunfeng Song , Lei Bai , Bowen Zhou

The increasing availability of large-scale datasets has fueled rapid progress across many scientific fields, creating unprecedented opportunities for research and discovery while posing significant analytical challenges. Recent advances in…

Artificial Intelligence · Computer Science 2025-12-01 Erzhuo Shao , Yifang Wang , Yifan Qian , Zhenyu Pan , Han Liu , Dashun Wang

Laboratory research is a complex, collaborative process that involves several stages, including hypothesis formulation, experimental design, data generation and analysis, and manuscript writing. Although reproducibility and data sharing are…

Other Quantitative Biology · Quantitative Biology 2025-02-12 Katharine Y. Chen , Maria Toro-Moreno , Arvind Rasi Subramaniam

Scientific software projects evolve rapidly in their initial development phase, yet at the end of a funding period, the completion of a research project, thesis, or publication, further engagement in the project may slow down or cease…

General Literature · Computer Science 2021-05-10 Jörg Fehr , Christian Himpe , Stephan Rave , Jens Saak

Science advances not only through the accumulation of facts but also through the evolution of tools. Crucially, tools are rarely used in isolation. They form tool portfolios, combinations shaped by a discipline's workflows and analytical…

Digital Libraries · Computer Science 2026-04-28 Zhouming Wu , Dakota Murray

Artificial intelligence systems for scientific discovery have demonstrated remarkable potential, yet existing approaches remain largely proprietary and operate in batch-processing modes requiring hours per research cycle, precluding…

Artificial Intelligence · Computer Science 2026-01-28 Lukas Weidener , Marko Brkić , Mihailo Jovanović , Ritvik Singh , Chiara Baccin , Emre Ulgac , Alex Dobrin , Aakaash Meduri

As large language models (LLMs) transition from general knowledge retrieval to complex scientific discovery, their evaluation standards must also incorporate the rigorous norms of scientific inquiry. Existing benchmarks exhibit a critical…

Artificial Intelligence · Computer Science 2026-01-13 Encheng Su , Jianyu Wu , Chen Tang , Lintao Wang , Pengze Li , Aoran Wang , Jinouwen Zhang , Yizhou Wang , Yuan Meng , Xinzhu Ma , Shixiang Tang , Houqiang Li

Object-Oriented Programming (OOP) has become a crucial paradigm for managing the growing complexity of modern software systems, particularly in fields like machine learning, deep learning, large language models (LLM), and data analytics.…

Computation and Language · Computer Science 2025-12-24 Tianyang Wang , Ziqian Bi , Keyu Chen , Jiawei Xu , Qian Niu , Junyu Liu , Benji Peng , Ming Li , Sen Zhang , Xuanhe Pan , Jinlang Wang , Pohsun Feng , Yizhu Wen , Xinyuan Song , Ming Liu

The reproduction and replication of novel results has become a major issue for a number of scientific disciplines. In computer science and related computational disciplines such as systems biology, the issues closely revolve around the…

Software Engineering · Computer Science 2014-09-17 Tom Crick , Benjamin A. Hall , Samin Ishtiaq

This research assesses the aspects of software organizations' DevOps environments and identifies the factors contributing to these environments' success. DevOps is a recent concept, and many organizations are moving from old-style software…

Software Engineering · Computer Science 2024-07-17 Ashley Gwangwadza , Ridewaan Hanslo

A science is defined by a set of encyclopedic knowledge related to facts or phenomena following rules or evidenced by experimentally-driven observations. Computer Science and in particular computer networks is a relatively new scientific…

Applying DevOps practices to machine learning system is termed as MLOps and machine learning systems evolve on new data unlike traditional systems on requirements. The objective of MLOps is to establish a connection between different…

Software Engineering · Computer Science 2024-02-21 Pir Sami Ullah Shah , Naveed Ahmad , Mirza Omer Beg

DevOps (development and operations), has significantly changed the way to overcome deficiencies for delivering high-quality software to production environments. Past years witnessed an increased interest in embedding DevOps with…

Software Engineering · Computer Science 2024-09-06 Ricardo M. Czekster

Machine Learning Operations (MLOps) is becoming a highly crucial part of businesses looking to capitalize on the benefits of AI and ML models. This research presents a detailed review of MLOps, its benefits, difficulties, evolutions, and…

Software Engineering · Computer Science 2023-06-01 A. I. Ullah Tabassam

In its Vision and Strategy for Software for Science, Engineering, and Education the NSF states that it will invest in activities that: "Recognize that software strategies must include the secure and reliable deployment and operation of…

Cryptography and Security · Computer Science 2013-09-09 Randy Heiland , Betsy Thomas , Von Welch , Craig Jackson

The rapid advancement of large language models (LLMs) has opened new possibilities for automating the proposal of innovative scientific ideas. This process involves two key phases: literature retrieval and idea generation. However, existing…

Computation and Language · Computer Science 2025-02-18 Wenxiao Wang , Lihui Gu , Liye Zhang , Yunxiang Luo , Yi Dai , Chen Shen , Liang Xie , Binbin Lin , Xiaofei He , Jieping Ye

The growing demand for connected devices and the increase in investments in the Internet of Things (IoT) sector induce the growth of the market for this technology. IoT permeates all areas of life of an individual, from smartwatches to…

Software Engineering · Computer Science 2021-05-13 Igor Muzetti Pereira , Tiago Garcia de Senna Carneiro , Eduardo Figueiredo

In the evolving landscape of clinical informatics, the integration and utilization of software tools developed through governmental funding represent a pivotal advancement in research and application. However, the dispersion of these tools…

Digital Libraries · Computer Science 2024-03-28 Jeremy R. Harper

Automated scientific discovery with large language models is transforming the research lifecycle from ideation to experimentation, yet existing agents struggle to autonomously process raw data collected from scientific experiments. We…

Artificial Intelligence · Computer Science 2026-04-29 Ke Lin , Yilin Lu , Shreyas Bhat , Xuehang Guo , Junier Oliva , Qingyun Wang