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The reconstruction of phylogenetic networks is an important but challenging problem in phylogenetics and genome evolution, as the space of phylogenetic networks is vast and cannot be sampled well. One approach to the problem is to solve the…

Populations and Evolution · Quantitative Biology 2023-04-14 Louxin Zhang , Niloufar Abhari , Caroline Colijn , Yufeng Wu

Higher order networks are able to characterize data as different as functional brain networks, protein interaction networks and social networks beyond the framework of pairwise interactions. Most notably higher order networks include…

Disordered Systems and Neural Networks · Physics 2018-11-26 Daan Mulder , Ginestra Bianconi

An increasing abstraction has marked some recent investigations in network science. Examples include the development of algorithms that map time series data into networks whose vertices and edges can have different interpretations, beyond…

Physics and Society · Physics 2020-11-24 Arthur A. B. Pessa , Haroldo V. Ribeiro

Network science provides effective tools to model and analyze complex systems. However, the increasing size of real-world networks becomes a major hurdle in order to understand their structure and topological features. Therefore, mapping…

Social and Information Networks · Computer Science 2020-08-11 Zakariya Ghalmane , Chantal Cherifi , Hocine Cherifi , Mohammed El Hassouni

The new concept of multilevel network is introduced in order to embody some topological properties of complex systems with structures in the mesoscale which are not completely captured by the classical models. This new model, which…

Preferential attachment lies at the heart of many network models aiming to replicate features of real world networks. To simulate the attachment process, conduct statistical tests, or obtain input data for benchmarks, efficient algorithms…

Data Structures and Algorithms · Computer Science 2023-01-18 Daniel Allendorf , Ulrich Meyer , Manuel Penschuck , Hung Tran

We present and study in this paper a simple algorithm that produces so called growing Parallel Random Apollonian Networks (P-RAN) in any dimension d. Analytical derivations show that these networks still exhibit small-word and scale-free…

Discrete Mathematics · Computer Science 2009-04-30 Nicolas Bonnel , Pierre-François Marteau , Gildas G. Ménier

This paper gives a new algorithm for sampling tree-weighted partitions of a large class of planar graphs. Formally, the tree-weighted distribution on $k$-partitions of a graph weights $k$-partitions proportional to the product of the number…

Data Structures and Algorithms · Computer Science 2026-05-08 Sarah Cannon , Topher Pankow , Wesley Pegden , Jamie Tucker-Foltz

Quantifying the influence of microscopic details on the dynamics of development of the overall structure of a filamentous network is important in a number of biologically relevant contexts, but it is not obvious what order parameters can be…

Biological Physics · Physics 2021-01-04 Yossi Eliaz , Francois Nedelec , Greg Morrison , Herbert Levine , Margaret S. Cheung

Many approaches have been proposed to discover clusters within networks. Community finding field encompasses approaches which try to discover clusters where nodes are tightly related within them but loosely related with nodes of other…

Social and Information Networks · Computer Science 2019-08-08 Oscar Correa , Jeffrey Chan , Vinh Nguyen

The structure of many real networks is not locally tree-like and hence, network analysis fails to characterise their bond percolation properties. In a recent paper [P. Mann, V. A. Smith, J. B. O. Mitchell, and S. Dobson, Percolation in…

Physics and Society · Physics 2021-01-27 Peter Mann , V. Anne Smith , John B. O. Mitchell , Simon Dobson

The irreducible complexity of natural phenomena has led Graph Neural Networks to be employed as a standard model to perform representation learning tasks on graph-structured data. While their capacity to capture local and global patterns is…

Machine Learning · Computer Science 2024-02-13 Lorenzo Giusti

We consider the task of detecting a salient cluster in a sensor network, that is, an undirected graph with a random variable attached to each node. Motivated by recent research in environmental statistics and the drive to compete with the…

Statistics Theory · Mathematics 2013-03-22 Ery Arias-Castro , Geoffrey R. Grimmett

Euclidean Steiner trees are relevant to model minimal networks in real-world applications ubiquitously. In this paper, we study the feasibility of a hierarchical approach embedded with bundling operations to compute multiple and mutually…

Artificial Intelligence · Computer Science 2024-12-03 Victor Parque

Different network models have been suggested for the topology underlying complex interactions in natural systems. These models are aimed at replicating specific statistical features encountered in real-world networks. However, it is rarely…

Physics and Society · Physics 2012-06-11 Stefano Cardanobile , Volker Pernice , Moritz Deger , Stefan Rotter

Most of the real world networks such as the internet network, collaboration networks, brain networks, citation networks, powerline and airline networks are very large and to study their structure, and dynamics one often requires working…

Physics and Society · Physics 2020-05-05 Richa Tripathi , Amit Reza

While previous works have shown that an overwhelming number of scale-free networks are sparse, there still exist some real-world networks including social networks, urban networks, information networks, which are by observation dense. In…

Social and Information Networks · Computer Science 2020-10-29 Fei Ma , Xiaomin Wang , Ping Wang , Xudong Luo

Networks play a central role in modern data analysis, enabling us to reason about systems by studying the relationships between their parts. Most often in network analysis, the edges are given. However, in many systems it is difficult or…

Machine Learning · Statistics 2014-02-06 Scott W. Linderman , Ryan P. Adams

Complex networks of real-world systems are believed to be controlled by common phenomena, producing structures far from regular or random. These include scale-free degree distributions, small-world structure and assortative mixing by…

Social and Information Networks · Computer Science 2013-05-24 Lovro Šubelj , Marko Bajec

The trapping problem on graph (or network) as a typical focus of great interest has attracted more attention from various science fields, including applied mathematics and theoretical computer science, in the past. Here, we first study this…

Discrete Mathematics · Computer Science 2020-02-28 Fei Ma , Ping Wang
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