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Advances in experimental neuroscience have transformed our ability to explore the structure and function of neural circuits. At the same time, advances in machine learning have unleashed the remarkable computational power of artificial…

Neurons and Cognition · Quantitative Biology 2021-11-23 SueYeon Chung , L. F. Abbott

Humans and animals can recognize latent structures in their environment and apply this information to efficiently navigate the world. However, it remains unclear what aspects of neural activity contribute to these computational…

Neurons and Cognition · Quantitative Biology 2024-04-12 Albert J. Wakhloo , Will Slatton , SueYeon Chung

Understanding how neural systems efficiently process information through distributed representations is a fundamental challenge at the interface of neuroscience and machine learning. Recent approaches analyze the statistical and geometrical…

Neurons and Cognition · Quantitative Biology 2025-04-01 Francesca Mignacco , Chi-Ning Chou , SueYeon Chung

Despite significant advances in the field of deep learning in ap-plications to various areas, an explanation of the learning pro-cess of neural network models remains an important open ques-tion. The purpose of this paper is a comprehensive…

Machine Learning · Computer Science 2023-06-07 German Magai

Despite significant advances in the field of deep learning in applications to various fields, explaining the inner processes of deep learning models remains an important and open question. The purpose of this article is to describe and…

Machine Learning · Computer Science 2022-04-20 German Magai , Anton Ayzenberg

Task-based modeling with recurrent neural networks (RNNs) has emerged as a popular way to infer the computational function of different brain regions. These models are quantitatively assessed by comparing the low-dimensional neural…

Neurons and Cognition · Quantitative Biology 2019-12-06 Niru Maheswaranathan , Alex H. Williams , Matthew D. Golub , Surya Ganguli , David Sussillo

The human brain is a complex inter-wired system that emerges spontaneous functional fluctuations. In spite of tremendous success in the experimental neuroscience field, a system-level understanding of how brain anatomy supports various…

Neurons and Cognition · Quantitative Biology 2024-05-28 Tingting Dan , Ziquan Wei , Won Hwa Kim , Guorong Wu

A key feature of neural network architectures is their ability to support the simultaneous interaction among large numbers of units in the learning and processing of representations. However, how the richness of such interactions trades off…

Recent developments in experimental neuroscience make it possible to simultaneously record the activity of thousands of neurons. However, the development of analysis approaches for such large-scale neural recordings have been slower than…

Neurons and Cognition · Quantitative Biology 2022-10-18 Rufus Mitchell-Heggs , Seigfred Prado , Giuseppe P. Gava , Mary Ann Go , Simon R. Schultz

Brains and artificial neural networks compute with continuous variables such as object position or stimulus orientation. However, the complex variability in neural responses makes it difficult to link internal representational structure to…

Neurons and Cognition · Quantitative Biology 2026-03-12 Will Slatton , Chi-Ning Chou , SueYeon Chung

Drawing motivation from the manifold hypothesis, which posits that most high-dimensional data lies on or near low-dimensional manifolds, we apply manifold learning to the space of neural networks. We learn manifolds where datapoints are…

This work develops the global equations of neural networks through stacked piecewise manifolds, fixed-point theory, and boundary-conditioned iteration. Once fixed coordinates and operators are removed, a neural network appears as a…

Machine Learning · Computer Science 2025-12-09 Max Y. Ma , Gen-Hua Shi

We study the multiple manifold problem, a binary classification task modeled on applications in machine vision, in which a deep fully-connected neural network is trained to separate two low-dimensional submanifolds of the unit sphere. We…

Machine Learning · Statistics 2021-05-07 Sam Buchanan , Dar Gilboa , John Wright

Within one decade, Deep Learning overtook the dominating solution methods of countless problems of artificial intelligence. ``Deep'' refers to the deep architectures with operations in manifolds of which there are no immediate observations.…

Machine Learning · Computer Science 2024-10-15 Julian Stier

Deciphering the underpinnings of the dynamical processes leading to information transmission, processing, and storing in the brain is a crucial challenge in neuroscience. An inspiring but speculative theoretical idea is that such dynamics…

Statistical Mechanics · Physics 2023-07-21 Guillermo B. Morales , Serena Di Santo , Miguel A. Muñoz

In biological evolution complex neural structures grow from a handful of cellular ingredients. As genomes in nature are bounded in size, this complexity is achieved by a growth process where cells communicate locally to decide whether to…

Neural and Evolutionary Computing · Computer Science 2024-05-15 Eleni Nisioti , Erwan Plantec , Milton Montero , Joachim Winther Pedersen , Sebastian Risi

Bias formation in deep neural networks (DNNs) remains a critical yet poorly understood challenge, influencing both fairness and reliability in artificial intelligence systems. Inspired by the human visual system, which decouples object…

Computer Vision and Pattern Recognition · Computer Science 2025-07-28 Yanbiao Ma , Bowei Liu , Andi Zhang

Our theoretical understanding of deep learning has not kept pace with its empirical success. While network architecture is known to be critical, we do not yet understand its effect on learned representations and network behavior, or how…

Machine Learning · Computer Science 2022-07-22 Andrew M. Saxe , Shagun Sodhani , Sam Lewallen

Deep neural networks can approximate functions on different types of data, from images to graphs, with varied underlying structure. This underlying structure can be viewed as the geometry of the data manifold. By extending recent advances…

Machine Learning · Computer Science 2023-01-03 Saket Tiwari , George Konidaris

Neural manifolds summarize the intrinsic structure of the information encoded by a population of neurons. Advances in experimental techniques have made simultaneous recordings from multiple brain regions increasingly commonplace, raising…

Neurons and Cognition · Quantitative Biology 2025-03-27 Iris H. R. Yoon , Gregory Henselman-Petrusek , Yiyi Yu , Robert Ghrist , Spencer LaVere Smith , Chad Giusti
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