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Disordered molecular systems such as amorphous catalysts, organic thin films, electrolyte solutions, and water are at the cutting edge of computational exploration today. Traditional simulations of such systems at length-scales relevant to…

Mesoscale and Nanoscale Physics · Physics 2023-09-06 Ata Madanchi , Michael Kilgour , Frederik Zysk , Thomas D. Kühne , Lena Simine

Liquid water, besides being fundamental for life on Earth, has long fascinated scientists due to several anomalies. Different hypotheses have been put forward to explain these peculiarities. The most accredited one foresees the presence in…

Numerical Analysis · Mathematics 2022-10-26 Michele Benzi , Isabella Daidone , Chiara Faccio , Laura Zanetti-Polzi

Amorphous interfacial complexions have been shown to restrict grain growth and improve damage tolerance in nanocrystalline alloys, with increased chemical complexity stabilizing the complexions themselves. Here, we investigate local…

Materials Science · Physics 2026-03-05 Esther C. Hessong , Zhengyu Zhang , Tianjiao Lei , Mingjie Xu , Toshihiro Aoki , Timothy J. Rupert

We perform molecular dynamics simulations to investigate the relationship between structural order and water-like dynamic and thermodynamic anomalies in spherically-symmetric potentials having either one or two characteristic length scales.…

Soft Condensed Matter · Physics 2009-11-11 Zhenyu Yan , Sergey V. Buldyrev , Nicolas Giovambattista , H. Eugene Stanley

Working in two space dimensions, we show that the orientational order emerging from self-propelled polar particles aligning nematically is quasi-long-ranged beyond $\ell_{\rm r}$, the scale associated to induced velocity reversals, which is…

Soft Condensed Matter · Physics 2021-07-28 Benoît Mahault , Hugues Chaté

Polymorphism is ubiquitous in crystalline solids. Amorphous solids, such as glassy water and silicon, may undergo amorphous-to-amorphous transitions (AATs). The nature of AATs remains ambiguous, due to diverse system-dependent behaviors and…

We report the discovery of a mixed orientational structure in the quasi-one-dimensional fluid of hard non-spherical bodies with the exact calculation of the thermodynamic and structural quantities using the transfer operator method. The…

Soft Condensed Matter · Physics 2025-10-13 Sakineh Mizani , Martin Oettel , Péter Gurin , Szabolcs Varga

The study of irreducible higher-order interactions has become a core topic of study in complex systems. Two of the most well-developed frameworks, topological data analysis and multivariate information theory, aim to provide formal tools…

Information Theory · Computer Science 2025-04-15 Thomas F. Varley , Pedro A. M. Mediano , Alice Patania , Josh Bongard

Using all-atomic molecular dynamics(MD) simulations, we show that various substrates could induce interfacial water (IW) to form the same ice-like oxygen lattice but different hydrogen polarity order, and regulate the heterogeneous ice…

Computational Physics · Physics 2020-02-19 Mingzhe Shao , Chuanbiao Zhang , Conghai Qi , Chunlei Wang , Jianjun Wang , Fangfu Ye , Xin Zhou

We represent an algorithm reducing a big class of systems of ($M+1$)-dimensional nonlinear partial differential equations (PDEs) to the systems of $M$-dimensional first order PDEs. Thus, we integrate the original system with respect to only…

Exactly Solvable and Integrable Systems · Physics 2015-05-20 A. I. Zenchuk

In supervised classification problems, the test set may contain data points belonging to classes not observed in the learning phase. Moreover, the same units in the test data may be measured on a set of additional variables recorded at a…

Methodology · Statistics 2021-02-04 Michael Fop , Pierre-Alexandre Mattei , Charles Bouveyron , Thomas Brendan Murphy

We monitor the transformation of a liquid into an amorphous solid in simulations of a glass forming liquid by measuring the variation of a structural order parameter with either changing temperature or potential energy to establish the…

Soft Condensed Matter · Physics 2023-06-07 Gang Sun , Peter Harrowell

We report measurements of the non-resonant inelastic x-ray scattering (NRIXS) from the O 1s orbitals in ice Ih, and also report calculations of the corresponding spectra for ice Ih and several other phases of water ice. We find that the…

Materials Science · Physics 2008-01-15 T. T. Fister , K. P. Nagle , F. D. Vila , G. T. Seidler , C. Hamner , J. O. Cross , J. J. Rehr

Candidates for random network media include, e.g., systems consisting of long, flexible macromolecules cross-linked (i.e., permanently bonded) together at random to form the network. Owing to the random architecture, the characteristics of…

Soft Condensed Matter · Physics 2024-12-18 Boli Zhou , Ziqi Zhou , Paul M. Goldbart

We have employed molecular dynamics simulations based on the TIP4P/2005 water model to investigate the local structural, dynamical, and dielectric properties of the two recently reported body-centered-cubic and face-centered-cubic plastic…

Soft Condensed Matter · Physics 2019-04-03 Ioannis Skarmoutsos , Stefano Mossa , Elvira Guardia

Multidimensional network data can have different levels of complexity, as nodes may be characterized by heterogeneous individual-specific features, which may vary across the networks. This paper introduces a class of models for…

Methodology · Statistics 2021-04-01 Silvia D'Angelo , Marco Alfò , Thomas Brendan Murphy

The unique structural properties of interfacial water are at the heart of a vast range of important processes in electrochemistry, climate science, and biophysics. At interfaces, water molecules exhibit preferential orientations and an…

Irregular multivariate time series data is characterized by varying time intervals between consecutive observations of measured variables/signals (i.e., features) and varying sampling rates (i.e., recordings/measurement) across these…

Machine Learning · Computer Science 2024-04-26 Xingyu Chen , Xiaochen Zheng , Amina Mollaysa , Manuel Schürch , Ahmed Allam , Michael Krauthammer

The topological properties of a material depend on its symmetries, parameters, and spatial dimension. Changes in these properties due to parameter and symmetry variations can be understood by computing the corresponding topological…

Mesoscale and Nanoscale Physics · Physics 2025-11-27 Martin Rodriguez-Vega , Terry A. Loring , Alexander Cerjan

Dimensionality reduction is a crucial step for pattern recognition and data mining tasks to overcome the curse of dimensionality. Principal component analysis (PCA) is a traditional technique for unsupervised dimensionality reduction, which…

Machine Learning · Computer Science 2017-05-04 Zan Gao , Guotai Zhang , Feiping Nie , Hua Zhang
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