Related papers: Limits of Mallows trees
The first-order theory of finite and infinite trees has been studied since the eighties, especially by the logic programming community. Following Djelloul, Dao and Fr\"uhwirth, we consider an extension of this theory with an additional…
There are several common ways to encode a tree as a matrix, such as the adjacency matrix, the Laplacian matrix (that is, the infinitesimal generator of the natural random walk), and the matrix of pairwise distances between leaves. Such…
In this paper, we study the dynamics of degenerating sequences of rational maps on Riemann sphere $\hat{\mathbb{C}}$ using $\mathbb{R}$-trees. Given a sequence of degenerating rational maps, we give two constructions for limiting dynamics…
Rooted binary perfect phylogenies provide a generalization of rooted binary unlabeled trees in which each leaf is assigned a positive integer value that corresponds in a biological setting to the count of the number of indistinguishable…
In analogy to other concepts of a similar nature, we define the inducibility of a rooted binary tree. Given a fixed rooted binary tree $B$ with $k$ leaves, we let $\gamma(B,T)$ be the proportion of all subsets of $k$ leaves in $T$ that…
We study the joint distribution of the number of occurrences of members of a collection of nonoverlapping motifs in digital data. We deal with finite and countably infinite collections. For infinite collections, the setting requires that we…
This extended abstract is dedicated to the analysis of the height of non-plane unlabelled rooted binary trees. The height of such a tree chosen uniformly among those of size $n$ is proved to have a limiting theta distribution, both in a…
A symbolic-computational algorithm, fully implemented in Maple, is described, that computes explicit expressions for generating functions that enable the efficient computations of the expectation, variance, and higher moments, of the random…
The \emph{maximum a posteriori} (MAP) assignment for general structure Markov random fields (MRFs) is computationally intractable. In this paper, we exploit tree-based methods to efficiently address this problem. Our novel method, named…
In this work we study the interleaving distance between merge trees from a combinatorial point of view. We use a particular type of matching between trees to obtain a novel formulation of the distance. With such formulation, we tackle the…
The problem of reconstructing evolutionary trees or phylogenies is of great interest in computational biology. A popular model for this problem assumes that we are given the set of leaves (current species) of an unknown binary tree and the…
For a uniform random labelled tree, we find the limiting distribution of tree parameters which are stable (in some sense) with respect to local perturbations of the tree structure. The proof is based on the martingale central limit theorem…
We prove the existence of a limit of the finite volume probability measures generated by tree growth rules in Ford's alpha model of phylogenetic trees. The limiting measure is shown to be concentrated on the set of trees consisting of…
We show that the Mallows measure on permutations of $1,\ldots,n$ arises as the law of the unique Gale-Shapley stable matching of the random bipartite graph conditioned to be perfect, where preferences arise from a total ordering of the…
Three-way dissimilarities are a generalization of (two-way) dissimilarities which can be used to indicate the lack of homogeneity or resemblance between any three objects. Such maps have applications in cluster analysis, and have been used…
The probability that two randomly selected phylogenetic trees of the same size are isomorphic is found to be asymptotic to a decreasing exponential modulated by a polynomial factor. The number of symmetrical nodes in a random phylogenetic…
We consider a continuous-time random walk on a regular tree of finite depth and study its favorite points among the leaf vertices. For the walk started from a leaf vertex and stopped upon hitting the root we prove that, in the limit as as…
Robertson and Seymour's celebrated Graph Minor Theorem states that graphs are well-quasi-ordered by the minor relation. Unlike the minor relation, the topological minor relation does not well-quasi-order graphs in general. Among all known…
The seminal work of Chow and Liu (1968) shows that approximation of a finite probabilistic system by Markov trees can achieve the minimum information loss with the topology of a maximum spanning tree. Our current paper generalizes the…
Motivated by online recommendation systems, we study a family of random forests. The vertices of the forest are labeled by integers. Each non-positive integer $i\le 0$ is the root of a tree. Vertices labeled by positive integers $n \ge 1$…