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The conventional approach for analyzing gene expression data involves clustering algorithms. Cluster analyses provide partitioning of the set of genes that can predict biological classification based on its similarity in n-dimensional…

Molecular Networks · Quantitative Biology 2022-08-23 Jhoirene B. Clemente , Gabriel Besas , Jerick Callado , John Erol Evangelista

Identifying overlapping communities in networks is a challenging task. In this work we present a novel approach to community detection that utilises the Bayesian non-negative matrix factorisation (NMF) model to produce a probabilistic…

Machine Learning · Statistics 2010-09-28 Ioannis Psorakis , Stephen Roberts , Ben Sheldon

An efficient and relatively fast algorithm for the detection of communities in complex networks is introduced. The method exploits spectral properties of the graph Laplacian-matrix combined with hierarchical-clustering techniques, and…

Statistical Mechanics · Physics 2009-11-10 Luca Donetti , Miguel A. Munoz

A basic question in network community detection is how modular a given network is. This is usually addressed by evaluating the quality of partitions detected in the network. The Girvan-Newman (GN) modularity function is the standard way to…

Physics and Society · Physics 2022-05-25 Filipi N. Silva , Aiiad Albeshri , Vijey Thayananthan , Wadee Alhalabi , Santo Fortunato

Graph embedding methods are becoming increasingly popular in the machine learning community, where they are widely used for tasks such as node classification and link prediction. Embedding graphs in geometric spaces should aid the…

Graph Neural Networks (GNNs) have improved unsupervised community detection of clustered nodes due to their ability to encode the dual dimensionality of the connectivity and feature information spaces of graphs. Identifying the latent…

Machine Learning · Computer Science 2023-11-28 William Leeney , Ryan McConville

Many algorithms have been proposed for detecting disjoint communities (relatively densely connected subgraphs) in networks. One popular technique is to optimize modularity, a measure of the quality of a partition in terms of the number of…

Physics and Society · Physics 2012-02-03 Bowen Yan , Steve Gregory

Networks observed in real world like social networks, collaboration networks etc., exhibit temporal dynamics, i.e. nodes and edges appear and/or disappear over time. In this paper, we propose a generative, latent space based, statistical…

Social and Information Networks · Computer Science 2018-11-08 Shubham Gupta , Gaurav Sharma , Ambedkar Dukkipati

Community detection is a central task in graph analytics. Given the substantial growth in graph size, scalability in community detection continues to be an unresolved challenge. Recently, alongside established methods like Louvain and…

Social and Information Networks · Computer Science 2024-12-18 Tianyi Chen , Charalampos E. Tsourakakis

Integral curves have been widely used to represent and analyze various vector fields. In this paper, we propose a Curve Segment Neighborhood Graph (CSNG) to capture the relationships between neighboring curve segments. This graph…

Social and Information Networks · Computer Science 2024-10-10 Nguyen Phan , Guoning Chen

We benchmark the dynamical simplex evolution (DSE) method with several of the currently available algorithms to detect communities in complex networks by comparing the fraction of correctly identified nodes for different levels of…

Disordered Systems and Neural Networks · Physics 2009-11-13 V. Gudkov , V. Montealegre

Networks are a widely-used tool to investigate the large-scale connectivity structure in complex systems and graphons have been proposed as an infinite size limit of dense networks. The detection of communities or other meso-scale…

Computation · Statistics 2021-01-05 Florian Klimm , Nick S. Jones , Michael T. Schaub

he greatest weakness of evolutionary algorithms, widely used today, is the premature convergence due to the loss of population diversity over generations. To overcome this problem, several algorithms have been proposed, such as the…

Neural and Evolutionary Computing · Computer Science 2019-08-22 Asmaa Ghoumari , Amir Nakib

The analysis and detection of communities in network structures are becoming increasingly relevant for understanding social behavior. One of the principal challenges in this field is the complexity of existing algorithms. The Girvan-Newman…

Social and Information Networks · Computer Science 2024-08-26 Julio-Omar Palacio-Niño , Fernando Berzal

Many complex networks display a mesoscopic structure with groups of nodes sharing many links with the other nodes in their group and comparatively few with nodes of different groups. This feature is known as community structure and encodes…

Physics and Society · Physics 2009-07-31 Andrea Lancichinetti , Santo Fortunato

Modularity maximization using greedy algorithms continues to be a popular approach toward community detection in graphs, even after various better forming algorithms have been proposed. Apart from its clear mechanism and ease of…

Physics and Society · Physics 2019-01-23 Tatsuro Kawamoto , Yoshiyuki Kabashima

The representation of data and its relationships using networks is prevalent in many research fields such as computational biology, medical informatics and social networks. Recently, complex networks models have been introduced to better…

Social and Information Networks · Computer Science 2021-03-08 Pietro Hiram Guzzi , Giuseppe Tradigo , Pierangelo Veltri

Traditionally, community detection in graphs can be solved using spectral methods or posterior inference under probabilistic graphical models. Focusing on random graph families such as the stochastic block model, recent research has unified…

Machine Learning · Statistics 2020-08-11 Zhengdao Chen , Xiang Li , Joan Bruna

Community detection is the problem of identifying natural divisions in networks. Efficient parallel algorithms for identifying such divisions is critical in a number of applications, where the size of datasets have reached significant…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-06-24 Subhajit Sahu

Many real-world networks are complex dynamical systems, where both local (e.g., changing node attributes) and global (e.g., changing network topology) processes unfold over time. Local dynamics may provoke global changes in the network, and…

Machine Learning · Computer Science 2017-10-10 Wenzhe Li , Dong Guo , Greg Ver Steeg , Aram Galstyan
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