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In cardiac CINE, motion-compensated MR reconstruction (MCMR) is an effective approach to address highly undersampled acquisitions by incorporating motion information between frames. In this work, we propose a novel perspective for…

Image and Video Processing · Electrical Eng. & Systems 2024-08-19 Jiazhen Pan , Wenqi Huang , Daniel Rueckert , Thomas Küstner , Kerstin Hammernik

Quality assessment of medical images is essential for complete automation of image processing pipelines. For large population studies such as the UK Biobank, artefacts such as those caused by heart motion are problematic and manual…

Computer Vision and Pattern Recognition · Computer Science 2018-09-03 Ilkay Oksuz , Bram Ruijsink , Esther Puyol-Anton , Aurelien Bustin , Gastao Cruz , Claudia Prieto , Daniel Rueckert , Julia A. Schnabel , Andrew P. King

Based on a 3D pre-treatment magnetic resonance (MR) scan, we developed DREME-MR to jointly reconstruct the reference patient anatomy and a data-driven, patient-specific cardiorespiratory motion model. Via a motion encoder simultaneously…

Medical Physics · Physics 2025-07-04 Hua-Chieh Shao , Xiaoxue Qian , Guoping Xu , Can Wu , Ricardo Otazo , Jie Deng , You Zhang

Quantitative T1rho mapping has shown promise in clinical and research studies. However, it suffers from long scan times. Deep learning-based techniques have been successfully applied in accelerated quantitative MR parameter mapping.…

Image and Video Processing · Electrical Eng. & Systems 2024-07-25 Yuanyuan Liu , Jinwen Xie , Zhuo-Xu Cui , Qingyong Zhu , Jing Cheng , Dong Liang , Yanjie Zhu

This work addresses a central topic in Magnetic Resonance Imaging (MRI) which is the motion-correction problem in a joint reconstruction and registration framework. From a set of multiple MR acquisitions corrupted by motion, we aim at -…

High-resolution slice-to-volume reconstruction (SVR) from multiple motion-corrupted low-resolution 2D slices constitutes a critical step in image-based diagnostics of moving subjects, such as fetal brain Magnetic Resonance Imaging (MRI).…

In this work, we propose a novel image reconstruction framework that directly learns a neural implicit representation in k-space for ECG-triggered non-Cartesian Cardiac Magnetic Resonance Imaging (CMR). While existing methods bin acquired…

Image and Video Processing · Electrical Eng. & Systems 2023-06-21 Wenqi Huang , Hongwei Li , Jiazhen Pan , Gastao Cruz , Daniel Rueckert , Kerstin Hammernik

Muscle forces and joint kinematics estimated with musculoskeletal (MSK) modeling techniques offer useful metrics describing movement quality. Model-based computational MSK models can interpret the dynamic interaction between the neural…

Machine Learning · Computer Science 2023-09-13 Yue Shi , Shuhao Ma , Yihui Zhao

Functional MRI (fMRI) is crucial for studying brain function and diagnosing neurological disorders. However, existing analysis methods suffer from reproducibility and transferability challenges due to complex preprocessing pipelines and…

Purpose: To develop a deep learning-based Bayesian inference for MRI reconstruction. Methods: We modeled the MRI reconstruction problem with Bayes's theorem, following the recently proposed PixelCNN++ method. The image reconstruction from…

Computer Vision and Pattern Recognition · Computer Science 2022-02-18 GuanXiong Luo , Na Zhao , Wenhao Jiang , Edward S. Hui , Peng Cao

Image registration is an ill-posed inverse problem which often requires regularisation on the solution space. In contrast to most of the current approaches which impose explicit regularisation terms such as smoothness, in this paper we…

Image and Video Processing · Electrical Eng. & Systems 2020-07-09 Chen Qin , Shuo Wang , Chen Chen , Huaqi Qiu , Wenjia Bai , Daniel Rueckert

Quality assessment, including inspecting the images for artifacts, is a critical step during MRI data acquisition to ensure data quality and downstream analysis or interpretation success. This study demonstrates a deep learning model to…

Computer Vision and Pattern Recognition · Computer Science 2024-02-15 Marina Manso Jimeno , Keerthi Sravan Ravi , Maggie Fung , John Thomas Vaughan, , Sairam Geethanath

Generating multi-contrasts/modal MRI of the same anatomy enriches diagnostic information but is limited in practice due to excessive data acquisition time. In this paper, we propose a novel deep-learning model for joint reconstruction and…

Image and Video Processing · Electrical Eng. & Systems 2022-06-30 Wanyu Bian , Qingchao Zhang , Xiaojing Ye , Yunmei Chen

Magnetic Resonance Imaging (MRI) is a principal diagnostic approach used in the field of radiology to create images of the anatomical and physiological structure of patients. MRI is the prevalent medical imaging practice to find…

Computer Vision and Pattern Recognition · Computer Science 2021-06-16 Yusuf Brima , Mossadek Hossain Kamal Tushar , Upama Kabir , Tariqul Islam

Accelerated Magnetic Resonance Imaging (MRI) requires careful optimization of k-space sampling patterns to balance acquisition speed and image quality. While recent advances in deep learning have shown promise in optimizing Cartesian…

Tissues and Organs · Quantitative Biology 2025-08-15 Ruru Xu , Ilkay Oksuz

Acquiring fully-sampled MRI $k$-space data is time-consuming, and collecting accelerated data can reduce the acquisition time. Employing 2D Cartesian-rectilinear subsampling schemes is a conventional approach for accelerated acquisitions;…

Image and Video Processing · Electrical Eng. & Systems 2023-08-11 George Yiasemis , Clara I. Sánchez , Jan-Jakob Sonke , Jonas Teuwen

High-resolution whole-brain in vivo MR imaging at mesoscale resolutions remains challenging due to long scan durations, motion artifacts, and limited signal-to-noise ratio (SNR). This study proposes Rotating-view super-resolution…

Image and Video Processing · Electrical Eng. & Systems 2025-05-26 Jun Lyu , Lipeng Ning , William Consagra , Qiang Liu , Richard J. Rushmore , Berkin Bilgic , Yogesh Rathi

Deformable registration consists of finding the best dense correspondence between two different images. Many algorithms have been published, but the clinical application was made difficult by the high calculation time needed to solve the…

Computer Vision and Pattern Recognition · Computer Science 2021-11-25 Théo Estienne , Maria Vakalopoulou , Enzo Battistella , Theophraste Henry , Marvin Lerousseau , Amaury Leroy , Nikos Paragios , Eric Deutsch

Magnetic Resonance Imaging (MRI) is indispensable in clinical practice but remains constrained by fragmented, multi-stage workflows encompassing acquisition, reconstruction, segmentation, detection, diagnosis, and reporting. While deep…

Computer Vision and Pattern Recognition · Computer Science 2025-08-26 Xingxin He , Aurora Rofena , Ruimin Feng , Haozhe Liao , Zhaoye Zhou , Albert Jang , Fang Liu

Magnetic Resonance Imaging (MRI) has long been considered to be among "the gold standards" of diagnostic medical imaging. The long acquisition times, however, render MRI prone to motion artifacts, let alone their adverse contribution to the…

Image and Video Processing · Electrical Eng. & Systems 2021-04-14 Tomer Weiss , Ortal Senouf , Sanketh Vedula , Oleg Michailovich , Michael Zibulevsky , Alex Bronstein