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Two mathematical models of macroevolution are studied. These models have population dynamics at the species level, and mutations and extinction of species are also included. The population dynamics are updated by difference equations with…

Populations and Evolution · Quantitative Biology 2014-04-16 Yohsuke Murase , Takashi Shimada , Nobuyasu Ito , Per Arne Rikvold

The evolution of antimicrobial resistance can be strongly affected by variations of antimicrobial concentration. Here, we study the impact of periodic alternations of absence and presence of antimicrobial on resistance evolution in a…

Populations and Evolution · Quantitative Biology 2020-04-14 Loïc Marrec , Anne-Florence Bitbol

Evolutionary game theory has proven to be an elegant framework providing many fruitful insights in population dynamics and human behaviour. Here, we focus on the aspect of behavioural plasticity and its effect on the evolution of…

Populations and Evolution · Quantitative Biology 2020-09-29 M. Kleshnina , K. Kaveh , K. Chatterjee

In human societies the probability of strategy adoption from a given person may be affected by the personal features. Now we investigate how an artificially imposed restricted ability to reproduce, overruling ones fitness, affects an…

Populations and Evolution · Quantitative Biology 2008-04-10 A. Szolnoki , M. Perc , G. Szabo

Feedback loops between population dynamics of individuals and their ecological environment are ubiquitously found in nature, and have shown profound effects on the resulting eco-evolutionary dynamics. Incorporating linear environmental…

Physics and Society · Physics 2020-07-01 Xin Wang , Zhiming Zheng , Feng Fu

We derive from first principles a three-dimensional theory of self-propelled particle swarming in a viscous fluid environment. Our model predicts emergent collective behavior that depends critically on fluid opacity, mechanism of…

Soft Condensed Matter · Physics 2026-05-12 Yao-Li Chuang , M. R. D'Orsogna , T. Chou

Cooperation among unrelated individuals is frequently observed in social groups when their members combine efforts and resources to obtain a shared benefit that is unachievable by an individual alone. However, understanding why cooperation…

Microbes produce metabolic resources that are important for cell growth yet leak across membranes into the extracellular environment. Other microbes in the same environment can use these resources and adjust their own metabolic production…

Populations and Evolution · Quantitative Biology 2018-01-16 Yoav Kallus , John H. Miller , Eric Libby

Stable mixtures of cooperators and defectors are often seen in nature. This fact is at odds with predictions based on linear public goods games under weak selection. That model implies fixation either of cooperators or of defectors, and the…

Populations and Evolution · Quantitative Biology 2012-11-15 Roberto H. Schonmann , Renato Vicente , Robert Boyd

The influence of migration on the stochastic dynamics of subdivided populations is still an open issue in various evolutionary models. We develop here a self-consistent mean-field-like method in order to determine the effects of migration…

Statistical Mechanics · Physics 2014-04-10 Pierangelo Lombardo , Andrea Gambassi , Luca Dall'Asta

To effectively forage in natural environments, organisms must adapt to changes in the quality and yield of food sources across multiple timescales. Individuals foraging in groups act based on both their private observations and the opinions…

Populations and Evolution · Quantitative Biology 2019-07-09 Subekshya Bidari , Orit Peleg , Zachary P Kilpatrick

Microbial communities routinely have several possible species compositions or community states observed for the same environmental parameters. Changes in these parameters can trigger abrupt and persistent transitions (regime shifts) between…

Populations and Evolution · Quantitative Biology 2019-07-03 Veronika Dubinkina , Yulia Fridman , Parth Pratim Pandey , Sergei Maslov

In this paper we extend the investigation of cooperation in some classical evolutionary games on populations were the network of interactions among individuals is of the scale-free type. We show that the update rule, the payoff computation…

Physics and Society · Physics 2009-11-13 M. Tomassini , L. Luthi , E. Pestelacci

The growth and evolution of microbial populations is often subjected to advection by fluid flows in spatially extended environments, with immediate consequences for questions of spatial population genetics in marine ecology, planktonic…

Populations and Evolution · Quantitative Biology 2022-08-26 Roberto Benzi , David R. Nelson , Suraj Shankar , Federico Toschi , Xiaojue Zhu

The intestinal microbiota plays important roles in digestion and resistance against entero-pathogens. As with other ecosystems, its species composition is resilient against small disturbances but strong perturbations such as antibiotics can…

Quantitative Methods · Quantitative Biology 2015-06-04 Vanni Bucci , Serena Bradde , Giulio Biroli , Joao B. Xavier

Community effects on the behaviour of individuals, the community itself and other communities can be observed in a wide range of applications. This is true in scientific research, where communities of researchers have increasingly to…

Social and Information Networks · Computer Science 2010-12-01 Václav Belák , Marcel Karnstedt , Conor Hayes

Extortion strategies can dominate any opponent in an iterated prisoner's dilemma game. But if players are able to adopt the strategies performing better, extortion becomes widespread and evolutionary unstable. It may sometimes act as a…

Physics and Society · Physics 2014-02-17 Attila Szolnoki , Matjaz Perc

Situations where individuals have to contribute to joint efforts or share scarce resources are ubiquitous. Yet, without proper mechanisms to ensure cooperation, the evolutionary pressure to maximize individual success tends to create a…

Physics and Society · Physics 2010-05-03 Dirk Helbing , Attila Szolnoki , Matjaz Perc , Gyorgy Szabo

Configurational arrangement of network architecture and interaction character of individuals are two most influential factors on the mechanisms underlying the evolutionary outcome of cooperation, which is explained by the well-established…

Populations and Evolution · Quantitative Biology 2018-02-16 Bijan Sarkar

Pro-social punishment and exclusion are common means to elevate the level of cooperation among unrelated individuals. Indeed, it is worth pointing out that the combined use of these two strategies is quite common across human societies.…

Physics and Society · Physics 2018-12-27 Linjie Liu , Shengxian Wang , Xiaojie Chen , Matjaz Perc