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We consider the phylogenetic tree model in which every node of the tree is observed and binary and the transitions are given by the same matrix on each edge of the tree. We are able to compute the Grobner basis and Markov basis of the toric…

Combinatorics · Mathematics 2007-05-23 Nicholas Eriksson

In each dimension n>2 there are many projective simplicial toric varieties whose Grothendieck groups of vector bundles are at least as big as the ground field. In particular, the conjecture that the Grothendieck groups of locally trivial…

Algebraic Geometry · Mathematics 2007-05-23 Joseph Gubeladze

Toric quiver varieties (moduli spaces of quiver representations) are studied. Given a quiver and a weight there is an associated quasiprojective toric variety together with a canonical embedding into projective space. It is shown that for a…

Representation Theory · Mathematics 2014-02-21 M. Domokos , Dániel Joó

We consider the Graver basis, the universal Groebner basis, a Markov basis and the set of the circuits of a toric ideal. Let $A, B$ be any two of these bases such that $A\not \subset B$, we prove that there is no polynomial on the size or…

Combinatorics · Mathematics 2021-01-26 Christos Tatakis , Apostolos Thoma

We investigate Gauss maps of (not necessarily normal) projective toric varieties over an algebraically closed field of arbitrary characteristic. The main results are as follows: (1) The structure of the Gauss map of a toric variety is…

Algebraic Geometry · Mathematics 2014-03-05 Katsuhisa Furukawa , Atsushi Ito

We describe a generating set for the initial ideal of simplicial toric ideals with respect to the graded reverse lexicographic order, using representations of elements of affine monoids as sums of irreducible elements. Although the…

Commutative Algebra · Mathematics 2026-03-10 Ryotaro Hanyu

To every toric ideal one can associate an oriented matroid structure, consisting of a graph and another toric ideal, called bouquet ideal. The connected components of this graph are called bouquets. Bouquets are of three types; free, mixed…

Commutative Algebra · Mathematics 2022-06-08 Dimitra Kosta , Apostolos Thoma , Marius Vladoiu

It is shown that up to dimension four, the toric ideal of a quiver polytope is generated in degree two, with the only exception of the four-dimensional Birkhoff polytope. As a consequence, B{\o}gvad's conjecture holds for quiver polytopes…

Commutative Algebra · Mathematics 2017-07-04 M. Domokos , Dániel Joó

In this article we consider the problem of finding generators of the toric ideal associated to a combinatorial object called a staged tree. Our main theorem states that toric ideals of staged trees that are balanced and stratified are…

Commutative Algebra · Mathematics 2021-04-21 Lamprini Ananiadi , Eliana Duarte

The set of all m-tuples of compatible full conditional distributions on discrete random variables is an algebraic set whose defining ideal is a unimodular toric ideal. We identify the defining polynomials of these ideals with closed walks…

Algebraic Geometry · Mathematics 2007-06-13 Aleksandra B Slavkovic , Seth Sullivant

In this paper, we discuss the normality of the toric rings of stable set polytopes, and the set of generators and Gr\"obner bases of toric ideals of stable set polytopes by using the results on that of edge polytopes of finite nonsimple…

Commutative Algebra · Mathematics 2019-07-12 Kazunori Matsuda , Hidefumi Ohsugi , Kazuki Shibata

Blockwise determinantal ideals are those generated by the union of all the minors of specified sizes in certain blocks of a generic matrix, and they are the natural generalization of many existing determinantal ideals like the Schubert and…

Commutative Algebra · Mathematics 2024-09-20 Chenqi Mou , Qiuye Song

We initiate a study of varieties of minimal degree in weighted projective spaces. We call a weighted projective space $\mathbf{P}(w_0,\dots,w_n)$ divisible if $w_i \mid w_{i+1}$ for all $i$. We provide sharp bounds for when a non-degenerate…

Commutative Algebra · Mathematics 2026-04-21 Maya Banks , Ritvik Ramkumar

In 1980, White conjectured that the toric ideal of a matroid is generated by quadratic binomials corresponding to a symmetric exchange. In this paper, we compute Gr\"obner bases of toric ideals associated with matroids and show that, for…

Commutative Algebra · Mathematics 2020-04-28 Ken-ichi Hayase , Takayuki Hibi , Koyo Katsuno , Kazuki Shibata

Let $G$ be a simple graph on the vertex set $\{1,\ldots,n\}$ with $m$ edges. An algebraic object attached to $G$ is the ideal $P_{G}$ generated by diagonal 2-minors of an $n \times n$ matrix of variables. In this paper we prove that if $G$…

Commutative Algebra · Mathematics 2016-07-26 Anargyros Katsabekis

The notion of higher order dual varieties of a projective variety, introduced in \cite{P83}, is a natural generalization of the classical notion of projective duality. In this paper we present geometric and combinatorial characterizations…

Algebraic Geometry · Mathematics 2016-09-19 Alicia Dickenstein , Ragni Piene

The set of common roots of a finite set $I$ (it is an ideal) of homogeneous polynomials is known as projective algebraic set $V$. In this article I show how to dualize such projective algebraic sets $V$ by elimination of variables from a…

Algebraic Geometry · Mathematics 2011-01-14 Călin-Şerban Bărbat

A graph-theoretic method, simpler than existing ones, is used to characterize the minimal set of monomial generators for the integral closure of any algebra of polynomials generated by quadratic monomials. The toric ideal of relations…

Commutative Algebra · Mathematics 2010-01-31 Peter M. Johnson

We investigate the structure of ideals generated by binomials (polynomials with at most two terms) and the schemes and varieties associated to them. The class of binomial ideals contains many classical examples from algebraic geometry, and…

alg-geom · Mathematics 2008-02-03 David Eisenbud , Bernd Sturmfels

The universal Gr\"obner basis of an ideal is a Gr\"obner basis with respect to all term orders simultaneously. The aim of this paper is to present an algorithmic approach to compute the universal Gr\"obner basis for the toric ideal…

Commutative Algebra · Mathematics 2019-04-23 Yannis C. Stamatiou , Christos Tatakis