Related papers: Relating Interleaving and Fr\'echet Distances via …
It is well-known that the height profile of a critical conditioned Galton-Watson tree with finite offspring variance converges, after a suitable normalization, to the local time of a standard Brownian excursion. In this work, we study the…
The phylogenetic Mean Pairwise Distance (MPD) is one of the most popular measures for computing the phylogenetic distance between a given group of species. More specifically, for a phylogenetic tree T and for a set of species R represented…
In this paper, we extend the notion of a merge tree to that of a generalized merge tree, a merge tree that includes 1-dimensional cycle birth information. Given a discrete Morse function on a $1$-dimensional regular CW complex, we construct…
Recent years have witnessed a surge of biological interest in the minimum spanning tree (MST) problem for its relevance to automatic model construction using the distances between data points. Despite the increasing use of MST algorithms…
A mated-CRT map is a random planar map obtained as a discretized mating of correlated continuum random trees. Mated-CRT maps provide a coarse-grained approximation of many other natural random planar map models (e.g., uniform triangulations…
The problem of computing topological distance between two scalar fields based on Reeb graphs or contour trees has been studied and applied successfully to various problems in topological shape matching, data analysis, and visualization.…
It has been claimed in Aldous, Miermont and Pitman [PTRF, 2004] that all L\'evy trees are mixings of inhomogeneous continuum random trees. We give a rigorous proof of this claim in the case of a stable branching mechanism, relying on a new…
In this article we investigate the Uniform Spanning Forest ($\mathsf{USF}$) in the nearest-neighbour integer lattice $\mathbf{Z}^{d+1} = \mathbf{Z}\times \mathbf{Z}^d$ with an assignment of conductances that makes the underlying (Network)…
Combinatorial trees can be used to represent genealogies of asexual individuals. These individuals can be endowed with birth and death times, to obtain a so-called `chronological tree'. In this work, we are interested in the continuum…
Computational inference of dated evolutionary histories relies upon various hypotheses about RNA, DNA, and protein sequence mutation rates. Using mutation rates to infer these dated histories is referred to as molecular clock assumption.…
It is unlikely that the discrete Fr\'echet distance between two curves of length $n$ can be computed in strictly subquadratic time. We thus consider the setting where one of the curves, $P$, is known in advance. In particular, we wish to…
Large tree structures are ubiquitous and real-world relational datasets often have information associated with nodes (e.g., labels or other attributes) and edges (e.g., weights or distances) that need to be communicated to the viewers. Yet,…
We study the problem of constructing a data structure that can store a two-dimensional polygonal curve $P$, such that for any query segment $\overline{ab}$ one can efficiently compute the Fr\'{e}chet distance between $P$ and…
We study the connections between sorting and the binary search tree (BST) model, with an aim towards showing that the fields are connected more deeply than is currently appreciated. While any BST can be used to sort by inserting the keys…
The general communication tree embedding problem is the problem of mapping a set of communicating terminals, represented by a graph G, into the set of vertices of some physical network represented by a tree T. In the case where the vertices…
Net-trees are a general purpose data structure for metric data that have been used to solve a wide range of algorithmic problems. We give a simple randomized algorithm to construct net-trees on doubling metrics using $O(n\log n)$ time in…
In order to study the statistics of the objects with hierarchical merging, we propose the skeleton tree formalism, which can analytically distinguish the episodic merging and the continuous accretion in the mass growth processes. The…
Comparative analyses of phylogenetic trees typically require identical taxon sets, however, in practice, trees often include distinct but overlapping taxa. Pruning non-shared leaves discards phylogenetic signal, whereas tree completion can…
Contour trees describe the topology of level sets in scalar fields and are widely used in topological data analysis and visualization. A main challenge of utilizing contour trees for large-scale scientific data is their computation at scale…
Trees are fundamental data structure for many areas of computer science and system engineering. In this report, we show how to ensure eventual consistency of optimistically replicated trees. In optimistic replication, the different replicas…