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The relationship between network topology and system dynamics has significant implications for unifying our understanding of the interplay among metabolic, gene-regulatory, and ecosystem network architecures. Here we analyze the stability…

Populations and Evolution · Quantitative Biology 2015-06-17 Cameron Smith , Raymond S. Puzio , Aviv Bergman

The irreducible complexity of natural phenomena has led Graph Neural Networks to be employed as a standard model to perform representation learning tasks on graph-structured data. While their capacity to capture local and global patterns is…

Machine Learning · Computer Science 2024-02-13 Lorenzo Giusti

A key issue in complex systems regards the relationship between topology and dynamics. In this work, we use a recently introduced network property known as steering coefficient as a means to approach this issue with respect to different…

Physics and Society · Physics 2017-11-27 Paulo J. P. de Souza , Cesar H. Comin , Luciano da F. Costa

Networks represent relationships between entities in many complex systems, spanning from online social interactions to biological cell development and brain connectivity. In many cases, relationships between entities are unambiguously…

Social and Information Networks · Computer Science 2018-01-23 Ivan Brugere , Brian Gallagher , Tanya Y. Berger-Wolf

We introduce a new class of latent process models for dynamic relational network data with the goal of detecting time-dependent structure. Network data are often observed over time, and static network models for such data may fail to…

Methodology · Statistics 2013-11-15 Lucy F. Robinson , Carey E. Priebe

Empirical studies of graphs have contributed enormously to our understanding of complex systems. Known today as network science, what was originally a theoretical study of graphs has grown into a more scientific exploration of communities…

Quantitative Methods · Quantitative Biology 2020-01-01 Ryan E. Langendorf , Debra S. Goldberg

Multilayer networks are the underlying structures of multiple real-world systems where we have more than one type of interaction/relation between nodes: social, biological, computer, or communication, to name only a few. In many cases, they…

Social and Information Networks · Computer Science 2021-03-15 Piotr Bródka , Jarosław Jankowski , Radosław Michalski

Networked structures arise in a wide array of different contexts such as technological and transportation infrastructures, social phenomena, and biological systems. These highly interconnected systems have recently been the focus of a great…

Statistical Mechanics · Physics 2009-11-10 Alain Barrat , Marc Barthelemy , Romualdo Pastor-Satorras , Alessandro Vespignani

We consider an evolving network of a fixed number of nodes. The allocation of edges is a dynamical stochastic process inspired by biological reproduction dynamics, namely by deleting and duplicating existing nodes and their edges. The…

Statistical Mechanics · Physics 2007-09-14 Henrik Jeldtot Jensen

Economy, and consequently trade, is a fundamental part of human social organization which, until now, has not been studied within the network modelling framework. Networks are mathematical tools used in the modelling of a wide variety of…

Disordered Systems and Neural Networks · Physics 2009-11-10 M. Angeles Serrano , Marian Boguna

Understanding the evolution of cooperation in structured populations represented by networks is a problem of long research interest, and a most fundamental and widespread property of social networks related to cooperation phenomena is that…

Physics and Society · Physics 2023-09-25 Aming Li , Yao Meng , Lei Zhou , Naoki Masuda , Long Wang

Several networks occurring in real life have modular structures that are arranged in an hierarchical fashion. In this paper, we have proposed a model for such networks, using a stochastic generation method. Using this model we show that,…

Physics and Society · Physics 2009-03-12 Raj Kumar Pan , Sitabhra Sinha

Complementarity is one of the main features underlying the interactions in biological and biochemical systems. Inspired by those systems we propose a model for the dynamical evolution of a system composed by agents that interact due to…

Disordered Systems and Neural Networks · Physics 2009-11-07 M. Copelli , R. M. Zorzenon dos Santos , J. S. Sa Martins

Temporal networks, whose links are activated or deactivated over time, are used to represent complex systems such as social interactions or collaborations occurring at specific times. Such networks facilitate the spread of information and…

Social and Information Networks · Computer Science 2025-02-27 Tianrui Mao , Shilun Zhang , Alan Hanjalic , Huijuan Wang

Although most networks in nature exhibit complex topology the origins of such complexity remains unclear. We introduce a model of a growing network of interacting agents in which each new agent's membership to the network is determined by…

Disordered Systems and Neural Networks · Physics 2009-09-02 J. I. Perotti , O. V. Billoni , F. A. Tamarit , D. R. Chialvo , S. A. Cannas

Empirical temporal networks display strong heterogeneities in their dynamics, which profoundly affect processes taking place on these networks, such as rumor and epidemic spreading. Despite the recent wealth of data on temporal networks,…

Physics and Society · Physics 2014-10-13 Christian L. Vestergaard , Mathieu Génois , Alain Barrat

Social networks are organized into communities with dense internal connections, giving rise to high values of the clustering coefficient. In addition, these networks have been observed to be assortative, i.e. highly connected vertices tend…

Physics and Society · Physics 2016-09-08 R. Toivonen , J. -P. Onnela , J. Saramäki , J. Hyvönen , K. Kaski

We present an analysis of the topologies of a class of networks which are optimal in terms of the requirements of having as short a route as possible between any two nodes while yet keeping the congestion in the network as low as possible.…

Statistical Mechanics · Physics 2009-11-10 Vittoria Colizza , Jayanth R. Banavar , Amos Maritan , Andrea Rinaldo

This article explores the relationship between communities and short cycles in complex networks, based on the fact that nodes more densely connected amongst one another are more likely to be linked through short cycles. By identifying…

Disordered Systems and Neural Networks · Physics 2007-05-23 James Bagrow , Erik Bollt , Luciano da F. Costa

We investigate a network model based on an infinite regular square lattice embedded in the Euclidean plane where the node connection probability is given by the geometrical distance of nodes. We show that the degree distribution in the…

Physics and Society · Physics 2008-06-23 Matus Medo , Jan Smrek
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