Related papers: HyperPIE: Hyperparameter Information Extraction fr…
The exponential growth of academic publications has created an urgent need for automated tools capable of extracting structured knowledge from unstructured scientific texts. While large language models (LLMs) have demonstrated remarkable…
Large Language Models (LLMs) have demonstrated exceptional abilities in comprehending and generating text, motivating numerous researchers to utilize them for Information Extraction (IE) purposes, including Relation Extraction (RE).…
Large language models (LLMs) usually fall short on information extraction (IE) tasks and struggle to follow the complex instructions of IE tasks. This primarily arises from LLMs not being aligned with humans, as mainstream alignment…
Biomedical Event Extraction (BEE) is a challenging task that involves modeling complex relationships between fine-grained entities in biomedical text. BEE has traditionally been formulated as a classification problem. With recent…
Information extraction (IE) is an important task in Natural Language Processing (NLP), involving the extraction of named entities and their relationships from unstructured text. In this paper, we propose a novel approach to this task by…
The volume of academic paper submissions and publications is growing at an ever increasing rate. While this flood of research promises progress in various fields, the sheer volume of output inherently increases the amount of noise. We…
Motivation: The biomedical literature contains a wealth of chemical-protein interactions (CPIs). Automatically extracting CPIs described in biomedical literature is essential for drug discovery, precision medicine, as well as basic…
Definitions are the foundation for any scientific work, but with a significant increase in publication numbers, gathering definitions relevant to any keyword has become challenging. We therefore introduce SciDef, an LLM-based pipeline for…
Information extraction (IE) plays very important role in natural language processing (NLP) and is fundamental to many NLP applications that used to extract structured information from unstructured text data. Heuristic-based searching and…
Extracting relations is critical for knowledge base completion and construction in which distant supervised methods are widely used to extract relational facts automatically with the existing knowledge bases. However, the automatically…
Typically, information extraction (IE) requires a pipeline approach: first, a sequence labeling model is trained on manually annotated documents to extract relevant spans; then, when a new document arrives, a model predicts spans which are…
Metadata of scientific articles such as title, abstract, keywords or index terms, body text, conclusion, reference and others play a decisive role in collecting, managing and storing academic data in scientific databases, academic journals…
Knowledge about entities and their interrelations is a crucial factor of success for tasks like question answering or text summarization. Publicly available knowledge graphs like Wikidata or DBpedia are, however, far from being complete. In…
Stepping from sentence-level to document-level, the research on relation extraction (RE) confronts increasing text length and more complicated entity interactions. Consequently, it is more challenging to encode the key information…
Recent advances in the healthcare industry have led to an abundance of unstructured data, making it challenging to perform tasks such as efficient and accurate information retrieval at scale. Our work offers an all-in-one scalable solution…
Conventional predictive modeling of parametric relationships in manufacturing processes is limited by the subjectivity of human expertise and intuition on the one hand and by the cost and time of experimental data generation on the other…
Open Information Extraction (OpenIE) aims to extract structured relational tuples (subject, relation, object) from sentences and plays critical roles for many downstream NLP applications. Existing solutions perform extraction at sentence…
The exponential growth of scientific literature challenges researchers extracting and synthesizing knowledge. Traditional search engines return many sources without direct, detailed answers, while general-purpose LLMs may offer concise…
With the advent of artificial intelligence (AI), many researchers are attempting to extract structured information from document-level biomedical literature by fine-tuning large language models (LLMs). However, they face significant…
This study presents OpenExtract, an open-source pipeline for automated data extraction in large-scale systematic literature reviews. The pipeline queries large language models (LLMs) to predict data entries based on relevant sections of…