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Requirements identification in textual documents or extraction is a tedious and error prone task that many researchers suggest automating. We manually annotated the PURE dataset and thus created a new one containing both requirements and…

Software Engineering · Computer Science 2022-02-07 Vladimir Ivanov , Andrey Sadovykh , Alexandr Naumchev , Alessandra Bagnato , Kirill Yakovlev

Relation extraction (RE) is a crucial task in natural language processing (NLP) that aims to identify and classify relationships between entities mentioned in text. In the financial domain, relation extraction plays a vital role in…

Computation and Language · Computer Science 2023-07-24 Pawan Kumar Rajpoot , Ankur Parikh

Biomedical information extraction (BioIE) is important to many applications, including clinical decision support, integrative biology, and pharmacovigilance, and therefore it has been an active research. Unlike existing reviews covering a…

Computation and Language · Computer Science 2016-06-28 Feifan Liu , Jinying Chen , Abhyuday Jagannatha , Hong Yu

This paper introduces a novel method for closed information extraction. The method employs a discriminative approach that incorporates type and entity-specific information to improve relation extraction accuracy, particularly benefiting…

Computation and Language · Computer Science 2025-06-23 Cedric Möller , Ricardo Usbeck

Automated relation extraction (RE) from biomedical literature is critical for many downstream text mining applications in both research and real-world settings. However, most existing benchmarking datasets for bio-medical RE only focus on…

Computation and Language · Computer Science 2022-07-20 Ling Luo , Po-Ting Lai , Chih-Hsuan Wei , Cecilia N Arighi , Zhiyong Lu

Information extraction (IE) is a fundamental area in natural language processing where prompting large language models (LLMs), even with in-context examples, cannot defeat small LMs tuned on very small IE datasets. We observe that IE tasks,…

Computation and Language · Computer Science 2024-04-02 Letian Peng , Zilong Wang , Feng Yao , Zihan Wang , Jingbo Shang

Metadata extraction is essential for cataloging and preserving datasets, enabling effective research discovery and reproducibility, especially given the current exponential growth in scientific research. While Masader (Alyafeai et al.,2021)…

Computation and Language · Computer Science 2025-09-19 Zaid Alyafeai , Maged S. Al-Shaibani , Bernard Ghanem

Recent advances in machine learning have significantly impacted the field of information extraction, with Language Models (LMs) playing a pivotal role in extracting structured information from unstructured text. Prior works typically…

Computation and Language · Computer Science 2024-10-03 Haolun Wu , Ye Yuan , Liana Mikaelyan , Alexander Meulemans , Xue Liu , James Hensman , Bhaskar Mitra

Open Information Extraction (OpenIE) represents a crucial NLP task aimed at deriving structured information from unstructured text, unrestricted by relation type or domain. This survey paper provides an overview of OpenIE technologies…

Computation and Language · Computer Science 2024-10-25 Pai Liu , Wenyang Gao , Wenjie Dong , Lin Ai , Ziwei Gong , Songfang Huang , Zongsheng Li , Ehsan Hoque , Julia Hirschberg , Yue Zhang

Compared to the general news domain, information extraction (IE) from biomedical text requires much broader domain knowledge. However, many previous IE methods do not utilize any external knowledge during inference. Due to the exponential…

Computation and Language · Computer Science 2021-06-02 Tuan Lai , Heng Ji , ChengXiang Zhai , Quan Hung Tran

Information extraction (IE) aims to produce structured information from an input text, e.g., Named Entity Recognition and Relation Extraction. Various attempts have been proposed for IE via feature engineering or deep learning. However,…

Computation and Language · Computer Science 2019-12-09 Wenya Wang , Sinno Jialin Pan

Large pre-trained language models have been shown to encode large amounts of world and commonsense knowledge in their parameters, leading to substantial interest in methods for extracting that knowledge. In past work, knowledge was…

Computation and Language · Computer Science 2021-03-12 Adi Haviv , Jonathan Berant , Amir Globerson

Because protein-protein interactions (PPIs) are crucial to understand living systems, harvesting these data is essential to probe disease development and discern gene/protein functions and biological processes. Some curated datasets contain…

Biomolecules · Quantitative Biology 2024-03-12 Gilchan Park , Sean McCorkle , Carlos Soto , Ian Blaby , Shinjae Yoo

This paper studies the automated categorization and extraction of scientific concepts from titles of scientific articles, in order to gain a deeper understanding of their key contributions and facilitate the construction of a generic…

Information Retrieval · Computer Science 2017-11-10 Adit Krishnan , Aravind Sankar , Shi Zhi , Jiawei Han

The work presented in this master thesis consists of extracting a set of events from texts written in natural language. For this purpose, we have based ourselves on the basic notions of the information extraction as well as the open…

Computation and Language · Computer Science 2019-07-03 Sihem Sahnoun

Overall, the two main contributions of this work include the application of sentence simplification to association extraction as described above, and the use of distributional semantics for concept extraction. The proposed work on concept…

Computation and Language · Computer Science 2011-09-13 Siddhartha Jonnalagadda

Document-level information extraction (IE) is a crucial task in natural language processing (NLP). This paper conducts a systematic review of recent document-level IE literature. In addition, we conduct a thorough error analysis with…

Computation and Language · Computer Science 2023-09-26 Hanwen Zheng , Sijia Wang , Lifu Huang

Knowledge syntheses (literature reviews) are essential to health professions education (HPE), consolidating findings to advance theory and practice. However, they are labor-intensive, especially during data extraction. Artificial…

Human-Computer Interaction · Computer Science 2025-08-15 Xi Long , Christy Boscardin , Lauren A. Maggio , Joseph A. Costello , Ralph Gonzales , Rasmyah Hammoudeh , Ki Lai , Yoon Soo Park , Brian C. Gin

This paper is devoted to the study of methods for information extraction (entity recognition and relation classification) from scientific texts on information technology. Scientific publications provide valuable information into…

Computation and Language · Computer Science 2020-12-29 Elena Bruches , Alexey Pauls , Tatiana Batura , Vladimir Isachenko

The rapid expansion of medical informatics literature presents significant challenges in synthesizing and analyzing research trends. This study introduces a novel dataset derived from the Medical Informatics Europe (MIE) Conference…

Information Retrieval · Computer Science 2024-10-08 Ehsan Bitaraf , Maryam Jafarpour