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Fourier Ptychographic Microscopy (FPM) is a computational imaging method that is able to super-resolve features beyond the diffraction-limit set by the objective lens of a traditional microscope. This is accomplished by using synthetic…

Signal Processing · Electrical Eng. & Systems 2019-04-09 Michael Kellman , Emrah Bostan , Michael Chen , Laura Waller

The Imaging Computational Microscope (ICM) is a suite of computational tools for automated analysis of functional imaging data that runs under the cross-platform MATLAB environment (The Mathworks, Inc.). ICM uses a semi-supervised…

Neurons and Cognition · Quantitative Biology 2015-02-26 E. Paxon Frady , William B. Kristan

Autonomous robot-assisted surgery demands reliable, high-precision platforms that strictly adhere to the safety and kinematic constraints of minimally invasive procedures. Existing research platforms, primarily based on the da Vinci…

Research data are the foundation of Artificial Intelligence (AI)-driven science, yet current AI applications remain limited to a few fields with readily available, well-structured, digitized datasets. Achieving comprehensive AI empowerment…

Ultrasound imaging is developing an open-source ecosystem, especially for software frameworks. Little exists on the open-hardware side. Hence a focus was put on producing easy-to-use technological (hardware and software) kit to allow anyone…

Medical Physics · Physics 2019-07-16 Luc Jonveaux

Background: Automated podocyte foot process quantification is vital for kidney research, but the established "Automatic Morphological Analysis of Podocytes" (AMAP) method is hindered by high computational demands, a lack of a user…

Computer Vision and Pattern Recognition · Computer Science 2026-02-17 Arash Fatehi , David Unnersjö-Jess , Linus Butt , Noémie Moreau , Thomas Benzing , Katarzyna Bozek

Physics-driven discovery in an autonomous experiment has emerged as a dream application of machine learning in physical sciences. Here we develop and experimentally implement a deep kernel learning workflow combining the correlative…

Materials Science · Physics 2022-11-24 Kevin M. Roccapriore , Sergei V. Kalinin , Maxim Ziatdinov

Exploring and understanding the functioning of the human brain is one of the greatest challenges for current research. Neuromorphic engineering tries to address this challenge by abstracting biological mechanisms and translating them into…

Signal Processing · Electrical Eng. & Systems 2024-06-04 René Harmann , Lukas Sohlbach , Fernando Perez-Peña , Karsten Schmidt

The principles of automation and innovation serve as foundational elements for advancement in contemporary science and technology. Here, we introduce Pygen, an automation platform designed to empower researchers, technologists, and…

Software Engineering · Computer Science 2025-06-13 Saikat Barua , Mostafizur Rahman , Md Jafor Sadek , Rafiul Islam , Shehenaz Khaled , Md. Shohrab Hossain

In preparing the way for the Square Kilometre Array and its pathfinders, there is a pressing need to begin probing the transient sky in a fully robotic fashion using the current generation of radio telescopes. Effective exploitation of such…

Instrumentation and Methods for Astrophysics · Physics 2015-08-26 Tim D. Staley , Gemma E. Anderson

The Square Kilometre Array (SKA) will operate one of the world's largest continuous scientific data systems, sustaining petascale imaging under strict power envelopes. Current radio-interferometric pipelines typically achieve only 4-14% of…

Survey telescopes such as the Vera C. Rubin Observatory and the Square Kilometre Array will discover billions of static and dynamic astronomical sources. Properly mined, these enormous datasets will likely be wellsprings of rare or unknown…

Instrumentation and Methods for Astrophysics · Physics 2021-10-07 Michelle Lochner , Bruce A. Bassett

We contend that embodied learning is fundamentally a lifecycle problem rather than a single-stage optimization. Systems that optimize only one link (data collection, simulation, learning, or deployment) rarely sustain improvement or…

A large number of computational scientific research projects make use of open source software packages. However, the development process of such tools frequently differs from conventional software development; partly because of the nature…

Software Engineering · Computer Science 2013-09-24 Ivan Girotto , Axel Kohlmeyer , David Grellscheid , Shawn T. Brown

The advancement of machine learning and the availability of large-scale reaction datasets have accelerated the development of data-driven models for computer-aided synthesis planning (CASP) in the past decade. Here, we detail the newest…

Automated experiments in scanning transmission electron microscopy (STEM) require rapid image segmentation to optimize data representation for human interpretation, decision-making, site-selective spectroscopies, and atomic manipulation.…

Materials Science · Physics 2024-09-23 Kamyar Barakati , Utkarsh Pratiush , Austin C. Houston , Gerd Duscher , Sergei V. Kalinin

DRAM is a critical component of modern computing systems. Recent works propose numerous techniques (that we call DRAM techniques) to enhance DRAM-based computing systems' throughput, reliability, and computing capabilities (e.g., in-DRAM…

Hardware Architecture · Computer Science 2025-06-24 Oğuzhan Canpolat , Ataberk Olgun , David Novo , Oğuz Ergin , Onur Mutlu

Array programming provides a powerful, compact, expressive syntax for accessing, manipulating, and operating on data in vectors, matrices, and higher-dimensional arrays. NumPy is the primary array programming library for the Python…

Scientific analyses commonly compose multiple single-process programs into a dataflow. An end-to-end dataflow of single-process programs is known as a many-task application. Typically, tools from the HPC software stack are used to…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-03-15 Zhao Zhang , Kyle Barbary , Frank Austin Nothaft , Evan Sparks , Oliver Zahn , Michael J. Franklin , David A. Patterson , Saul Perlmutter

Autonomous indoor flight for critical asset inspection presents fundamental challenges in perception, planning, control, and learning. Despite rapid progress, there is still a lack of a compact, active-sensing, open-source platform that is…

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