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Background Protein domain ranking is a fundamental task in structural biology. Most protein domain ranking methods rely on the pairwise comparison of protein domains while neglecting the global manifold structure of the protein domain…

Machine Learning · Computer Science 2013-04-23 Jim Jing-Yan Wang , Halima Bensmail , Xin Gao

The graph matching problem emerges naturally in various applications such as web privacy, image processing and computational biology. In this paper, graph matching is considered under a stochastic model, where a pair of randomly generated…

Information Theory · Computer Science 2021-01-27 Farhad Shirani , Siddharth Garg , Elza Erkip

Sparse, irregular graphs show up in various applications like linear algebra, machine learning, engineering simulations, robotic control, etc. These graphs have a high degree of parallelism, but their execution on parallel threads of modern…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-02-17 Nimish Shah , Wannes Meert , Marian Verhelst

The graph matching problem is a significant special case of the Quadratic Assignment Problem, with extensive applications in pattern recognition, computer vision, protein alignments and related fields. As the problem is NP-hard, relaxation…

Optimization and Control · Mathematics 2025-04-01 Rongxuan Li

In this work we target the problem of provably computing the equivalence between two programs represented as dataflow graphs. To this end, we formalize the problem of equivalence between two programs as finding a set of semantics-preserving…

Machine Learning · Computer Science 2021-06-07 Steve Kommrusch , Théo Barollet , Louis-Noël Pouchet

Graph pattern matching is a fundamental operation for the analysis and exploration ofdata graphs. In thispaper, we presenta novel approachfor efficiently finding homomorphic matches for hybrid graph patterns, where each pattern edge may be…

Databases · Computer Science 2022-09-29 Xiaoying Wu , Dimitri Theodoratos , Nikos Mamoulis , Michael Lan

In recent years, powered by the learned discriminative representation via graph neural network (GNN) models, deep graph matching methods have made great progresses in the task of matching semantic features. However, these methods usually…

Computer Vision and Pattern Recognition · Computer Science 2021-11-18 He Liu , Tao Wang , Yidong Li , Congyan Lang , Yi Jin , Haibin Ling

Design patterns being applied more and more to solve the software engineering difficulties in the object oriented software design procedures. So, the design pattern detection is widely used by software industries. Currently, many solutions…

Software Engineering · Computer Science 2014-08-27 Afnan Salem Ba-Brahem , M. Rizwan Jameel Qureshi

The big graph database model provides strong modeling for complex applications and efficient querying. However, it is still a big challenge to find all exact matches of a query graph in a big graph database, which is known as the subgraph…

Data Structures and Algorithms · Computer Science 2018-08-21 Merve Asiler , Adnan Yazıcı

The growing popularity of dynamic applications such as social networks provides a promising way to detect valuable information in real time. Efficient analysis over high-speed data from dynamic applications is of great significance. Data…

Databases · Computer Science 2018-09-05 Youhuan Li , Lei Zou , M. Tamer Ozsu , Dongyan Zhao

Boolean satisfiability (SAT) problems are routinely solved by SAT solvers in real-life applications, yet solving time can vary drastically between solvers for the same instance. This has motivated research into machine learning models that…

Multi-attributed graph matching is a problem of finding correspondences between two sets of data while considering their complex properties described in multiple attributes. However, the information of multiple attributes is likely to be…

Computer Vision and Pattern Recognition · Computer Science 2017-04-25 Han-Mu Park , Kuk-Jin Yoon

It is known that a graph isomorphism testing algorithm is polynomially equivalent to a detecting of a graph non-trivial automorphism algorithm. The polynomiality of the latter algorithm, is obtained by consideration of symmetry properties…

General Mathematics · Mathematics 2007-05-23 Aleksandr Golubchik

The graph isomorphism problem looks deceptively simple, but although polynomial-time algorithms exist for certain types of graphs such as planar graphs and graphs with bounded degree or eigenvalue multiplicity, its complexity class is still…

Discrete Mathematics · Computer Science 2025-07-11 Stefan Klus , Patrick Gelß

This thesis studies the graph alignment problem, the noisy version of the graph isomorphism problem, which aims to find a matching between the nodes of two graphs which preserves most of the edges. Focusing on the planted version where the…

Data Structures and Algorithms · Computer Science 2024-04-22 Luca Ganassali

Graph matching aims to find the latent vertex correspondence between two edge-correlated graphs and has found numerous applications across different fields. In this paper, we study a seeded graph matching problem, which assumes that a set…

Data Structures and Algorithms · Computer Science 2021-01-06 Liren Yu , Jiaming Xu , Xiaojun Lin

Graph partitioning is the problem of dividing the nodes of a graph into balanced partitions while minimizing the edge cut across the partitions. Due to its combinatorial nature, many approximate solutions have been developed, including…

Machine Learning · Computer Science 2019-03-05 Azade Nazi , Will Hang , Anna Goldie , Sujith Ravi , Azalia Mirhoseini

In a reconfiguration problem, we are given two feasible solutions of a combinatorial problem and our goal is to determine whether it is possible to reconfigure one into the other, with the steps dictated by specific reconfiguration rules.…

Data Structures and Algorithms · Computer Science 2025-01-27 Tatsuhiro Suga , Akira Suzuki , Yuma Tamura , Xiao Zhou

Graph isomorphism, a classical algorithmic problem, determines whether two input graphs are structurally identical or not. Interestingly, it is one of the few problems that is not yet known to belong to either the P or NP-complete…

Data Structures and Algorithms · Computer Science 2024-10-01 Sourav Dutta , Arnab Bhattacharya

To determine that two given undirected graphs are isomorphic, we construct for them auxiliary graphs, using the breadth-first search. This makes capability to position vertices in each digraph with respect to each other. If the given graphs…

Data Structures and Algorithms · Computer Science 2018-02-13 Anatoly D. Plotnikov