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In medical imaging, the heterogeneity of multi-centre data impedes the applicability of deep learning-based methods and results in significant performance degradation when applying models in an unseen data domain, e.g. a new centreor a new…

Computer Vision and Pattern Recognition · Computer Science 2020-08-12 Hongwei Li , Timo Loehr , Anjany Sekuboyina , Jianguo Zhang , Benedikt Wiestler , Bjoern Menze

Image reconstruction from undersampled k-space data has been playing an important role for fast MRI. Recently, deep learning has demonstrated tremendous success in various fields and also shown potential to significantly speed up MR…

Image and Video Processing · Electrical Eng. & Systems 2019-07-30 Dong Liang , Jing Cheng , Ziwen Ke , Leslie Ying

In resource-constrained environments, one can employ spatial multiplexing cameras to acquire a small number of measurements of a scene, and perform effective reconstruction or high-level inference using purely data-driven neural networks.…

Computer Vision and Pattern Recognition · Computer Science 2018-09-11 Suhas Lohit , Rajhans Singh , Kuldeep Kulkarni , Pavan Turaga

Purpose: To systematically investigate the influence of various data consistency layers, (semi-)supervised learning and ensembling strategies, defined in a $\Sigma$-net, for accelerated parallel MR image reconstruction using deep learning.…

Image and Video Processing · Electrical Eng. & Systems 2019-12-20 Kerstin Hammernik , Jo Schlemper , Chen Qin , Jinming Duan , Ronald M. Summers , Daniel Rueckert

In recent years, machine learning (ML) based reconstruction has been widely investigated and employed in cardiac magnetic resonance (CMR) imaging. ML-based reconstructions can deliver clinically acceptable image quality under substantially…

Image and Video Processing · Electrical Eng. & Systems 2024-11-18 Chi Zhang , Michael Loecher , Cagan Alkan , Mahmut Yurt , Shreyas S. Vasanawala , Daniel B. Ennis

The inherent slow imaging speed of Magnetic Resonance Image (MRI) has spurred the development of various acceleration methods, typically through heuristically undersampling the MRI measurement domain known as k-space. Recently, deep neural…

Image and Video Processing · Electrical Eng. & Systems 2022-04-13 Wei Peng , Li Feng , Guoying Zhao , Fang Liu

Probabilistic atlas priors have been commonly used to derive adaptive and robust brain MRI segmentation algorithms. Widely-used neuroimage analysis pipelines rely heavily on these techniques, which are often computationally expensive. In…

Computer Vision and Pattern Recognition · Computer Science 2019-07-24 Adrian V. Dalca , Evan Yu , Polina Golland , Bruce Fischl , Mert R. Sabuncu , Juan Eugenio Iglesias

Deep neural networks achieve state-of-the-art results for accelerated MRI reconstruction. Most research on deep learning based imaging focuses on improving neural network architectures trained and evaluated on fixed and homogeneous training…

Image and Video Processing · Electrical Eng. & Systems 2025-08-20 Kang Lin , Anselm Krainovic , Kun Wang , Reinhard Heckel

Magnetic Resonance Imaging (MRI) has become an important technique in the clinic for the visualization, detection, and diagnosis of various diseases. However, one bottleneck limitation of MRI is the relatively slow data acquisition process.…

Image and Video Processing · Electrical Eng. & Systems 2022-11-28 Xue Liu , Juan Zou , Xiawu Zheng , Cheng Li , Hairong Zheng , Shanshan Wang

Deep learning-based image reconstruction methods have achieved promising results across multiple MRI applications. However, most approaches require large-scale fully-sampled ground truth data for supervised training. Acquiring fully-sampled…

Image and Video Processing · Electrical Eng. & Systems 2020-09-01 Elizabeth K. Cole , John M. Pauly , Shreyas S. Vasanawala , Frank Ong

We propose a novel learning based algorithm to generate efficient and physically plausible sampling patterns in MRI. This method has a few advantages compared to recent learning based approaches: i) it works off-the-grid and ii) allows to…

Machine Learning · Computer Science 2020-10-06 Alban Gossard , Frédéric de Gournay , Pierre Weiss

This work is an endeavor to develop a deep learning methodology for automated anatomical labeling of a given region of interest (ROI) in brain computed tomography (CT) scans. We combine both local and global context to obtain a…

Computer Vision and Pattern Recognition · Computer Science 2018-01-23 Srikrishna Varadarajan , Muktabh Mayank Srivastava , Monika Grewal , Pulkit Kumar

The goal of MRI reconstruction is to restore a high fidelity image from partially observed measurements. This partial view naturally induces reconstruction uncertainty that can only be reduced by acquiring additional measurements. In this…

Computer Vision and Pattern Recognition · Computer Science 2019-02-11 Zizhao Zhang , Adriana Romero , Matthew J. Muckley , Pascal Vincent , Lin Yang , Michal Drozdzal

Purpose: To allow fast and high-quality reconstruction of clinical accelerated multi-coil MR data by learning a variational network that combines the mathematical structure of variational models with deep learning. Theory and Methods:…

Computer Vision and Pattern Recognition · Computer Science 2017-04-04 Kerstin Hammernik , Teresa Klatzer , Erich Kobler , Michael P Recht , Daniel K Sodickson , Thomas Pock , Florian Knoll

MRI is an inherently slow process, which leads to long scan time for high-resolution imaging. The speed of acquisition can be increased by ignoring parts of the data (undersampling). Consequently, this leads to the degradation of image…

Image and Video Processing · Electrical Eng. & Systems 2022-02-22 Soumick Chatterjee , Mario Breitkopf , Chompunuch Sarasaen , Hadya Yassin , Georg Rose , Andreas Nürnberger , Oliver Speck

A central limitation of multiple-acquisition magnetic resonance imaging (MRI) is the degradation in scan efficiency as the number of distinct datasets grows. Sparse recovery techniques can alleviate this limitation via randomly undersampled…

Image and Video Processing · Electrical Eng. & Systems 2017-10-03 L Kerem Senel , Toygan Kilic , Alper Gungor , Emre Kopanoglu , H Emre Guven , Emine U Saritas , Aykut Koc , Tolga Cukur

Deep metric learning maps visually similar images onto nearby locations and visually dissimilar images apart from each other in an embedding manifold. The learning process is mainly based on the supplied image negative and positive training…

Computer Vision and Pattern Recognition · Computer Science 2020-09-14 Chang-Hui Liang , Wan-Lei Zhao , Run-Qing Chen

Accelerated Magnetic Resonance Imaging (MRI) requires careful optimization of k-space sampling patterns to balance acquisition speed and image quality. While recent advances in deep learning have shown promise in optimizing Cartesian…

Tissues and Organs · Quantitative Biology 2025-08-15 Ruru Xu , Ilkay Oksuz

Deep learning approaches to accelerated MRI take a matrix of sampled Fourier-space lines as input and produce a spatial image as output. In this work we show that by careful choice of the offset used in the sampling procedure, the…

Image and Video Processing · Electrical Eng. & Systems 2020-02-05 Aaron Defazio

In scanning microscopy based imaging techniques, there is a need to develop novel data acquisition schemes that can reduce the time for data acquisition and minimize sample exposure to the probing radiation. Sparse sampling schemes are…

Signal Processing · Electrical Eng. & Systems 2018-03-09 Yan Zhang , G. M. Dilshan Godaliyadda , Nicola Ferrier , Emine B. Gulsoy , Charles A. Bouman , Charudatta Phatak