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Graph Neural Networks (GNNs) have been widely studied in various graph data mining tasks. Most existingGNNs embed graph data into Euclidean space and thus are less effective to capture the ubiquitous hierarchical structures in real-world…

Machine Learning · Computer Science 2022-03-04 Xingcheng Fu , Jianxin Li , Jia Wu , Qingyun Sun , Cheng Ji , Senzhang Wang , Jiajun Tan , Hao Peng , Philip S. Yu

We propose a conditional positional encoding (CPE) scheme for vision Transformers. Unlike previous fixed or learnable positional encodings, which are pre-defined and independent of input tokens, CPE is dynamically generated and conditioned…

Computer Vision and Pattern Recognition · Computer Science 2023-02-14 Xiangxiang Chu , Zhi Tian , Bo Zhang , Xinlong Wang , Chunhua Shen

Graph-structured data are widespread in real-world applications, such as social networks, recommender systems, knowledge graphs, chemical molecules etc. Despite the success of Euclidean space for graph-related learning tasks, its ability to…

Machine Learning · Computer Science 2022-11-09 Min Zhou , Menglin Yang , Lujia Pan , Irwin King

Data-efficient learning on graphs (GEL) is essential in real-world applications. Existing GEL methods focus on learning useful representations for nodes, edges, or entire graphs with ``small'' labeled data. But the problem of data-efficient…

Machine Learning · Computer Science 2023-02-24 Chang Liu , Yuwen Yang , Zhe Xie , Hongtao Lu , Yue Ding

Do autoregressive Transformer language models require explicit positional encodings (PEs)? The answer is 'no' provided they have more than one layer -- they can distinguish sequences with permuted tokens without the need for explicit PEs.…

Machine Learning · Computer Science 2025-06-03 Kazuki Irie

Graph Neural Networks (GNNs) have been generalized to process the heterogeneous graphs by various approaches. Unfortunately, these approaches usually model the heterogeneity via various complicated modules. This paper aims to propose a…

Machine Learning · Computer Science 2023-11-23 Junfu Wang , Yuanfang Guo , Liang Yang , Yunhong Wang

Recently a variety of methods have been developed to encode graphs into low-dimensional vectors that can be easily exploited by machine learning algorithms. The majority of these methods start by embedding the graph nodes into a…

Machine Learning · Computer Science 2018-09-13 Yu Jin , Joseph F. JaJa

This survey reviews hyperbolic graph embedding models, and evaluate them on anomaly detection, highlighting their advantages over Euclidean methods in capturing complex structures. Evaluating models like \textit{HGCAE},…

The Transformer architecture has become a dominant choice in many domains, such as natural language processing and computer vision. Yet, it has not achieved competitive performance on popular leaderboards of graph-level prediction compared…

Machine Learning · Computer Science 2021-11-25 Chengxuan Ying , Tianle Cai , Shengjie Luo , Shuxin Zheng , Guolin Ke , Di He , Yanming Shen , Tie-Yan Liu

Graph representation learning embeds nodes in large graphs as low-dimensional vectors and is of great benefit to many downstream applications. Most embedding frameworks, however, are inherently transductive and unable to generalize to…

Machine Learning · Computer Science 2020-02-27 Huiling Zhu , Xin Luo , Hankz Hankui Zhuo

Transformers flexibly operate over sets of real-valued vectors representing task-specific entities and their attributes, where each vector might encode one word-piece token and its position in a sequence, or some piece of information that…

Machine Learning · Computer Science 2023-03-14 Cameron Diao , Ricky Loynd

Most existing graph neural networks (GNNs) learn node embeddings using the framework of message passing and aggregation. Such GNNs are incapable of learning relative positions between graph nodes within a graph. To empower GNNs with the…

Machine Learning · Computer Science 2024-11-05 Zhenyue Qin , Yiqun Zhang Saeed Anwar , Dongwoo Kim , Yang Liu , Pan Ji , Tom Gedeon

Skeleton-based action recognition aims to recognize human actions given human joint coordinates with skeletal interconnections. By defining a graph with joints as vertices and their natural connections as edges, previous works successfully…

Computer Vision and Pattern Recognition · Computer Science 2023-03-23 Yuxuan Zhou , Zhi-Qi Cheng , Chao Li , Yanwen Fang , Yifeng Geng , Xuansong Xie , Margret Keuper

Bitcoin transaction networks are large scale socio- technical systems in which activities are represented through multi-hop interaction patterns. Graph Neural Networks(GNNs) have become a widely adopted tool for analyzing such systems,…

Machine Learning · Computer Science 2026-03-18 Ankit Ghimire , Saydul Akbar Murad , Nick Rahimi

Graph neural networks have been used for a variety of learning tasks, such as link prediction, node classification, and node clustering. Among them, link prediction is a relatively under-studied graph learning task, with current…

Machine Learning · Computer Science 2022-08-29 Xinxing Wu , Qiang Cheng

Graph neural networks (GNNs) are deep learning models designed specifically for graph data, and they typically rely on node features as the input to the first layer. When applying such a type of network on the graph without node features,…

We introduceGraphGPT, a novel self-supervised generative pre-trained model for graph learning based on the Graph Eulerian Transformer (GET). First, we propose GET, which combines a standard transformer encoder or decoder architecture with…

Machine Learning · Computer Science 2025-06-09 Qifang Zhao , Weidong Ren , Tianyu Li , Hong Liu , Xingsheng He , Xiaoxiao Xu

Transformers were originally proposed as a sequence-to-sequence model for text but have become vital for a wide range of modalities, including images, audio, video, and undirected graphs. However, transformers for directed graphs are a…

Machine Learning · Computer Science 2023-09-01 Simon Geisler , Yujia Li , Daniel Mankowitz , Ali Taylan Cemgil , Stephan Günnemann , Cosmin Paduraru

Learning graph representations via low-dimensional embeddings that preserve relevant network properties is an important class of problems in machine learning. We here present a novel method to embed directed acyclic graphs. Following prior…

Machine Learning · Computer Science 2018-06-08 Octavian-Eugen Ganea , Gary Bécigneul , Thomas Hofmann

Recent studies have demonstrated the effectiveness of position encoding in transformer architectures. By incorporating positional information, this approach provides essential guidance for modeling dependencies between elements across…

Machine Learning · Computer Science 2025-08-27 Avinash Amballa