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In many academic disciplines, software is created during the research process or for a research purpose. The crucial role of software for research is increasingly acknowledged. The application of software engineering to research software…

Software Engineering · Computer Science 2025-12-02 Stephan Druskat , Lars Grunske

SciLaD is a novel, large-scale dataset of scientific language constructed entirely using open-source frameworks and publicly available data sources. It comprises a curated English split containing over 10 million scientific publications and…

Context: When software is released publicly, it is common to include with it either the full text of the license or licenses under which it is published, or a detailed reference to them. Therefore public licenses, including FOSS (free, open…

Software Engineering · Computer Science 2023-08-23 Jesús M. González-Barahona , Sergio Montes-Leon , Gregorio Robles , Stefano Zacchiroli

Software is an important tool for scholarly work, but software produced for research is in many cases not easily identifiable or discoverable. A potential first step in linking research and software is software identification. In this paper…

Digital Libraries · Computer Science 2023-03-01 Eva Maxfield Brown , Lindsey Schwartz , Richard Lewei Huang , Nicholas Weber

In Open Source Software, the source code and any other resources available in a project can be viewed or reused by anyone subject to often permissive licensing restrictions. In contrast to some studies of dependency-based reuse supported…

Software Engineering · Computer Science 2024-02-12 Mahmoud Jahanshahi , Audris Mockus

Scientific advancement relies on the ability to share and reproduce results. When data analysis or calculations are carried out using software written by scientists there are special challenges around code versions, quality and code…

Software Engineering · Computer Science 2025-07-09 S. Lee , C. Myers , A. Yang , T. Zhang , S. J. L. Billinge

Open source software (OSS) is essential for modern society and, while substantial research has been done on individual (typically central) projects, only a limited understanding of the periphery of the entire OSS ecosystem exists. For…

Software Engineering · Computer Science 2020-11-02 Yuxing Ma , Tapajit Dey , Chris Bogart , Sadika Amreen , Marat Valiev , Adam Tutko , David Kennard , Russell Zaretzki , Audris Mockus

Scientific software is essential to scientific innovation and in many ways it is distinct from other types of software. Abandoned (or unmaintained), buggy, and hard to use software, a perception often associated with scientific software can…

Software Engineering · Computer Science 2025-06-23 Addi Malviya Thakur , Reed Milewicz , Mahmoud Jahanshahi , Lavínia Paganini , Bogdan Vasilescu , Audris Mockus

We introduce a large-scale dataset of the complete texts of free/open source software (FOSS) license variants. To assemble it we have collected from the Software Heritage archive-the largest publicly available archive of FOSS source code…

Software Engineering · Computer Science 2022-04-04 Stefano Zacchiroli

Various stakeholders, such as researchers, government agencies, businesses, and research laboratories require a large volume of reliable scientific research outcomes including research articles and patent data to support their work. These…

Databases · Computer Science 2024-10-01 Xinran Wu , Hui Zou , Yidan Xing , Jingjing Qu , Qiongxiu Li , Renxia Xue , Xiaoming Fu

Managing data and code in open scientific research is complicated by two key problems: large datasets often cannot be stored alongside code in repository platforms like GitHub, and iterative analysis can lead to unnoticed changes to data,…

Digital Libraries · Computer Science 2023-11-10 Vince Buffalo

Software quality research increasingly relies on large-scale datasets that measure both the product and process aspects of software systems. However, existing resources often focus on limited dimensions, such as code smells, technical debt,…

Software Engineering · Computer Science 2025-11-17 Mikel Robredo , Matteo Esposito , Davide Taibi , Rafael Peñaloza , Valentina Lenarduzzi

Ensuring the reproducibility of scientific work is crucial as it allows the consistent verification of scientific claims and facilitates the advancement of knowledge by providing a reliable foundation for future research. However,…

Software Engineering · Computer Science 2025-04-14 Lázaro Costa , Susana Barbosa , Jácome Cunha

We introduce SciWING, an open-source software toolkit which provides access to pre-trained models for scientific document processing tasks, inclusive of citation string parsing and logical structure recovery. SciWING enables researchers to…

Digital Libraries · Computer Science 2020-10-26 Abhinav Ramesh Kashyap , Min-Yen Kan

The increasing importance of Computational Science and Engineering has highlighted the need for high-quality scientific software. However, research software development is often hindered by limited funding, time, staffing, and technical…

Software Engineering · Computer Science 2025-03-10 Armin Ariamajd , Raquel López-Ríos de Castro , Andrea Volkamer

Critical goals of scientific computing are to increase scientific rigor, reproducibility, and transparency while keeping up with ever-increasing computational demands. This work presents an integrated framework well-suited for data…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-10-13 Paul Nuyujukian

Context: Scientific open-source software (SciOSS) plays a foundational role in research and engineering, yet its long-term sustainability has often been overlooked and remains a significant concern. Objective: This study investigates the…

Software Engineering · Computer Science 2026-05-06 Sheikh Md. Mushfiqur Rahman , Gregory R. Watson , Nasir U. Eisty

As part of its scholarly data efforts, the Internet Archive (IA) releases a first version of a citation graph dataset, named refcat, derived from scholarly publications and additional data sources. It is composed of data gathered by the…

Digital Libraries · Computer Science 2021-10-15 Martin Czygan , Helge Holzmann , Bryan Newbold

The library scikit-fda is a Python package for Functional Data Analysis (FDA). It provides a comprehensive set of tools for representation, preprocessing, and exploratory analysis of functional data. The library is built upon and integrated…

The management of security credentials (e.g., passwords, secret keys) for computational science workflows is a burden for scientists and information security officers. Problems with credentials (e.g., expiration, privilege mismatch) cause…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-07-13 Alex Withers , Brian Bockelman , Derek Weitzel , Duncan Brown , Jeff Gaynor , Jim Basney , Todd Tannenbaum , Zach Miller
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