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We have studied the elastic response of actin networks with both compliant and rigid crosslinks by modeling molecular motors as force dipoles. Our finite element simulations show that for compliant crosslinkers such as filamin A, the…

Soft Condensed Matter · Physics 2010-09-06 Peng Chen , Vivek B. Shenoy

Aiming at the mechanical properties of cross-linked biopolymers, we set up and analyze a model of two weakly bending wormlike chains subjected to a tensile force, with regularly spaced inter-chain bonds (cross-links) represented by harmonic…

Biological Physics · Physics 2014-06-24 Alice von der Heydt , Daniel Wilkin , Panayotis Benetatos , Annette Zippelius

The mechanical properties of biological materials are spatially heterogeneous. Typical tissues are made up of a spanning fibrous extracellular matrix in which various inclusions, such as living cells, are embedded. While the influence of…

Soft Condensed Matter · Physics 2025-09-04 Jordan L. Shivers , Jingchen Feng , Fred C. MacKintosh

Vision Transformer and its variants have been adopted in many visual tasks due to their powerful capabilities, which also bring significant challenges in computation and storage. Consequently, researchers have introduced various compression…

Neural and Evolutionary Computing · Computer Science 2024-07-30 Zeyu Wang , Weichen Dai , Xiangyu Zhou , Ji Qi , Yi Zhou

We investigate wrinkling of two-dimensional random and triangular semiflexible polymer networks under shear. Both types of semiflexible networks exhibit wrinkling above a small critical shear angle, which scales with an exponent of the…

Soft Condensed Matter · Physics 2014-06-06 Pascal Müller , Jan Kierfeld

We develop a continuum theory for equilibrium elasticity of a network of crosslinked semiflexible filaments, spanning the full range between flexible entropy-driven chains to stiff athermal rods. We choose the 3-chain constitutive model…

Soft Condensed Matter · Physics 2016-07-12 Fanlong Meng , Eugene M. Terentjev

The rigidity of elastic networks depends sensitively on their internal connectivity and the nature of the interactions between constituents. Particles interacting via central forces undergo a zero-temperature rigidity-percolation transition…

Soft Condensed Matter · Physics 2011-12-08 Chase P. Broedersz , Xiaoming Mao , T. C. Lubensky , F. C. MacKintosh

Structured pruning is an effective approach for compressing large pre-trained neural networks without significantly affecting their performance. However, most current structured pruning methods do not provide any performance guarantees, and…

Machine Learning · Computer Science 2023-02-14 Marwa El Halabi , Suraj Srinivas , Simon Lacoste-Julien

Biological membranes are one of the most basic structures and regions of interest in cell biology. In the study of membranes, segment extraction is a well-known and difficult problem because of impeding noise, directional and thickness…

Computer Vision and Pattern Recognition · Computer Science 2018-10-24 Joris Roels , Jonas De Vylder , Jan Aelterman , Yvan Saeys , Wilfried Philips

Pruning on neural networks before training not only compresses the original models, but also accelerates the network training phase, which has substantial application value. The current work focuses on fine-grained pruning, which uses…

Machine Learning · Computer Science 2022-09-28 Xiatao Kang , Ping Li , Jiayi Yao , Chengxi Li

Pruning is a compression method which aims to improve the efficiency of neural networks by reducing their number of parameters while maintaining a good performance, thus enhancing the performance-to-cost ratio in nontrivial ways. Of…

Neural and Evolutionary Computing · Computer Science 2023-09-25 Hugo Tessier , Ghouti Boukli Hacene , Vincent Gripon

Collagen is the main structural and load-bearing element of various connective tissues, where it forms the extracellular matrix that supports cells. It has long been known that collagenous tissues exhibit a highly nonlinear stress-strain…

Analyzing nonlinear conformational relaxation dynamics in elastic networks corresponding to two classical motor proteins, we find that they respond by well-defined internal mechanical motions to various initial deformations and that these…

Biomolecules · Quantitative Biology 2007-06-13 Yuichi Togashi , Alexander S. Mikhailov

A recurring motif in the organization of biological tissues are networks of long, fibrillar protein strands effectively confined to cylindrical surfaces. Often, the fibers in such curved, quasi-2D geometries adopt a characteristic order:…

Biological Physics · Physics 2015-12-23 Cyril Vrusch , Cornelis Storm

From the proliferative mechanisms generating neurons from progenitor cells to neuron migration and synaptic connection formation, several vicissitudes culminate in the mature brain. Both component loss and gain remain ubiquitous during…

Neurons and Cognition · Quantitative Biology 2024-08-06 Rodrigo Siqueira Kazu , Kleber Neves , Bruno Mota

Deep neural networks have achieved impressive performance in many applications but their large number of parameters lead to significant computational and storage overheads. Several recent works attempt to mitigate these overheads by…

Machine Learning · Computer Science 2019-06-17 Vikash Sehwag , Shiqi Wang , Prateek Mittal , Suman Jana

Recent theoretical work suggests that systematic pruning of disordered networks consisting of nodes connected by springs can lead to materials that exhibit a host of unusual mechanical properties. In particular, global properties such as…

We study the micromechanics of collagen-I gel with the goal of bridging the gap between theory and experiment in the study of biopolymer networks. Three-dimensional images of fluorescently labeled collagen are obtained by confocal…

Soft Condensed Matter · Physics 2009-09-29 Andrew M. Stein , David A. Vader , David A. Weitz , Leonard M. Sander

Compression of convolutional neural network models has recently been dominated by pruning approaches. A class of previous works focuses solely on pruning the unimportant filters to achieve network compression. Another important direction is…

Computer Vision and Pattern Recognition · Computer Science 2022-10-17 Tariq M. Khan , Syed S. Naqvi , Antonio Robles-Kelly , Erik Meijering

We study the structure and dynamics of a transient network composed of droplets of microemulsion connected by telechelic polymers. The polymer induces a bridging attraction between droplets without changing their shape. A viscoelastic…

Soft Condensed Matter · Physics 2009-10-31 F. Molino , J. Appell , M. Filali , E. Michel , G. Porte , S. Mora , E. Sunyer