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Ultra-thin multimode optical fiber imaging promises next-generation medical endoscopes reaching high image resolution for deep tissues. However, current technology suffers from severe optical distortion, as the fiber's calibration is…
Hyperspectral images (HSI) have become popular for analysing remotely sensed images in multiple domain like agriculture, medical. However, existing models struggle with complex relationships and characteristics of spectral-spatial data due…
Tracking microsctructural changes in the developing brain relies on accurate inter-subject image registration. However, most methods rely on either structural or diffusion data to learn the spatial correspondences between two or more…
Diffusion magnetic resonance imaging (dMRI) and tractography provide means to study the anatomical structures within the white matter of the brain. When studying tractography data across subjects, it is usually necessary to align, i.e. to…
Optical transmission spectroscopy is one method to understand brain tissue structural properties from brain tissue biopsy samples, yet manual interpretation is resource intensive and prone to inter observer variability. Deep convolutional…
Connectivity information derived from diffusion-weighted magnetic resonance images~(DW-MRIs) plays an important role in studying human subcortical gray matter structures. However, due to the $O(N^2)$ complexity of computing the connectivity…
Deep learning methods for accelerated MRI achieve state-of-the-art results but largely ignore additional speedups possible with noncartesian sampling trajectories. To address this gap, we created a generative diffusion model-based…
We propose a novel and efficient algorithm to model high-level topological structures of neuronal fibers. Tractography constructs complex neuronal fibers in three dimensions that exhibit the geometry of white matter pathways in the brain.…
The present paper introduces a method for substantial reduction of the number of diffusion encoding gradients required for reliable reconstruction of HARDI signals. The method exploits the theory of compressed sensing (CS), which…
Sparse connectivity is an important factor behind the success of convolutional neural networks and recurrent neural networks. In this paper, we consider the problem of learning sparse connectivity for feedforward neural networks (FNNs). The…
Deep Neural Network (DNN)-based image reconstruction, despite many successes, often exhibits uneven fidelity between high and low spatial frequency bands. In this paper we propose the Learning Synthesis by DNN (LS-DNN) approach where two…
Hyperspectral image super-resolution addresses the problem of fusing a low-resolution hyperspectral image (LR-HSI) and a high-resolution multispectral image (HR-MSI) to produce a high-resolution hyperspectral image (HR-HSI). Tensor analysis…
Processing of Diffusion MRI data obtained from High Angular Resolution measurements consists of a series of steps, starting with the estimation of an orientation distribution function (ODF), which is then used as input for e.g. tractography…
Perception of the full state is an essential technology to support the monitoring, analysis, and design of physical systems, one of whose challenges is to recover global field from sparse observations. Well-known for brilliant approximation…
We introduce DiHuR, a novel Diffusion-guided model for generalizable Human 3D Reconstruction and view synthesis from sparse, minimally overlapping images. While existing generalizable human radiance fields excel at novel view synthesis,…
Purpose: To develop an algorithm for robust partial Fourier (PF) reconstruction applicable to diffusion-weighted (DW) images with non-smooth phase variations. Methods: Based on an unrolled proximal splitting algorithm, a neural network…
Multi-mode fibers provide an increased amount of data transfer rates given a large number of transmission modes. Unfortunately, the increased number of modes in a multi-mode fiber hinders the accurate transfer of information due to…
Echo-planar imaging (EPI) remains the cornerstone of diffusion MRI, but it is prone to severe geometric distortions due to its rapid sampling scheme that renders the sequence highly sensitive to $B_{0}$ field inhomogeneities. While deep…
Diffusion-weighted magnetic resonance imaging (dMRI) is widely used to assess the brain white matter. One of the most common computations in dMRI involves cross-subject tract-specific analysis, whereby dMRI-derived biomarkers are compared…
Each voxel in a diffusion MRI (dMRI) image contains a spherical signal corresponding to the direction and strength of water diffusion in the brain. This paper advances the analysis of such spatio-spherical data by developing convolutional…