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Related papers: Predictive Chemistry Augmented with Text Retrieval

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Image-text contrastive learning models such as CLIP have demonstrated strong task transfer ability. The high generality and usability of these visual models is achieved via a web-scale data collection process to ensure broad concept…

Computer Vision and Pattern Recognition · Computer Science 2023-01-18 Haotian Liu , Kilho Son , Jianwei Yang , Ce Liu , Jianfeng Gao , Yong Jae Lee , Chunyuan Li

This study proposes a text classification algorithm based on large language models, aiming to address the limitations of traditional methods in capturing long-range dependencies, understanding contextual semantics, and handling class…

Computation and Language · Computer Science 2025-12-11 Ning Lyu , Yuxi Wang , Feng Chen , Qingyuan Zhang

Information extraction from chemistry literature is vital for constructing up-to-date reaction databases for data-driven chemistry. Complete extraction requires combining information across text, tables, and figures, whereas prior work has…

Machine Learning · Computer Science 2024-04-03 Vincent Fan , Yujie Qian , Alex Wang , Amber Wang , Connor W. Coley , Regina Barzilay

Deep neural networks have emerged as a powerful technique for learning representations from user-item interaction data in collaborative filtering (CF) for recommender systems. However, many existing methods heavily rely on unique user and…

Information Retrieval · Computer Science 2025-10-21 Xubin Ren , Chao Huang

Retrieval-Augmented Generation (RAG) systems in chemistry heavily depend on accurate and relevant retrieval of chemical literature. However, general-purpose text embedding models frequently fail to adequately represent complex chemical…

Retrieval-based conversational systems learn to rank response candidates for a given dialogue context by computing the similarity between their vector representations. However, training on a single textual form of the multi-turn context…

Computation and Language · Computer Science 2022-04-19 Lahari Poddar , Peiyao Wang , Julia Reinspach

Despite recent progress in text-to-image (T2I) generation, existing models often struggle to faithfully capture user intentions from short and under-specified prompts. While prior work has attempted to enhance prompts using large language…

Computer Vision and Pattern Recognition · Computer Science 2025-05-26 Mingrui Wu , Lu Wang , Pu Zhao , Fangkai Yang , Jianjin Zhang , Jianfeng Liu , Yuefeng Zhan , Weihao Han , Hao Sun , Jiayi Ji , Xiaoshuai Sun , Qingwei Lin , Weiwei Deng , Dongmei Zhang , Feng Sun , Qi Zhang , Rongrong Ji

We present data augmentation techniques for process extraction tasks in scientific publications. We cast the process extraction task as a sequence labeling task where we identify all the entities in a sentence and label them according to…

Computation and Language · Computer Science 2025-04-16 Yuni Susanti

Text mining the relations between chemicals and proteins is an increasingly important task. The CHEMPROT track at BioCreative VI aims to promote the development and evaluation of systems that can automatically detect the chemical-protein…

Computation and Language · Computer Science 2018-02-06 Yifan Peng , Anthony Rios , Ramakanth Kavuluru , Zhiyong Lu

Although there have been approaches that are capable of learning action models from plan traces, there is no work on learning action models from textual observations, which is pervasive and much easier to collect from real-world…

Machine Learning · Computer Science 2022-02-21 Kebing Jin , Huaixun Chen , Hankz Hankui Zhuo

Large Language Models (LLMs) have been integrated into recommendation systems to enhance user behavior comprehension. The Retrieval Augmented Generation (RAG) technique is further incorporated into these systems to retrieve more relevant…

Information Retrieval · Computer Science 2025-02-12 Jian Xu , Sichun Luo , Xiangyu Chen , Haoming Huang , Hanxu Hou , Linqi Song

One technique to improve the retrieval effectiveness of a search engine is to expand documents with terms that are related or representative of the documents' content.From the perspective of a question answering system, this might comprise…

Information Retrieval · Computer Science 2019-09-26 Rodrigo Nogueira , Wei Yang , Jimmy Lin , Kyunghyun Cho

Retrieval-augmented generation (RAG) has emerged as a powerful framework for enhancing large language models (LLMs) with external knowledge, particularly in scientific domains that demand specialized and dynamic information. Despite its…

Computation and Language · Computer Science 2026-02-17 Xianrui Zhong , Bowen Jin , Siru Ouyang , Yanzhen Shen , Qiao Jin , Yin Fang , Zhiyong Lu , Jiawei Han

Molecular property prediction and generative design via deep learning models has been the subject of intense research given its potential to accelerate development of new, high-performance materials. More recently, these workflows have been…

Artificial Intelligence · Computer Science 2024-12-16 Nathaniel H. Park , Tiffany J. Callahan , James L. Hedrick , Tim Erdmann , Sara Capponi

This paper explores the usage of multimodal image-to-text models to enhance text-based item retrieval. We propose utilizing pre-trained image captioning and tagging models, such as instructBLIP and CLIP, to generate text-based product…

Information Retrieval · Computer Science 2024-02-14 Jason Tang , Garrin McGoldrick , Marie Al-Ghossein , Ching-Wei Chen

Text-based representations of chemicals and proteins can be thought of as unstructured languages codified by humans to describe domain-specific knowledge. Advances in natural language processing (NLP) methodologies in the processing of…

Biomolecules · Quantitative Biology 2020-02-17 Hakime Öztürk , Arzucan Özgür , Philippe Schwaller , Teodoro Laino , Elif Ozkirimli

In recent years, protein-text models have gained significant attention for their potential in protein generation and understanding. Current approaches focus on integrating protein-related knowledge into large language models through…

Computation and Language · Computer Science 2025-11-11 Juntong Wu , Zijing Liu , He Cao , Hao Li , Bin Feng , Zishan Shu , Ke Yu , Li Yuan , Yu Li

The fast-growing number of research articles makes it problematic for scholars to keep track of the new findings related to their areas of expertise. Furthermore, linking knowledge across disciplines in rapidly developing fields becomes…

Computation and Language · Computer Science 2024-07-04 Sofia Gil-Clavel , Tatiana Filatova

There is an intuitive analogy of an organic chemist's understanding of a compound and a language speaker's understanding of a word. Consequently, it is possible to introduce the basic concepts and analyze potential impacts of linguistic…

Machine Learning · Computer Science 2017-11-16 Philippe Schwaller , Theophile Gaudin , David Lanyi , Costas Bekas , Teodoro Laino

Retrieval augmentation is critical when Language Models (LMs) exploit non-parametric knowledge related to the query through external knowledge bases before reasoning. The retrieved information is incorporated into LMs as context alongside…

Information Retrieval · Computer Science 2024-11-21 Mingzhu Wang , Yuzhe Zhang , Qihang Zhao , Junyi Yang , Hong Zhang