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In this paper, we present Knowledge4COVID-19, a framework that aims to showcase the power of integrating disparate sources of knowledge to discover adverse drug effects caused by drug-drug interactions among COVID-19 treatments and…

Large Language Models (LLMs) demonstrate an impressive capacity to recall a vast range of factual knowledge. However, understanding their underlying reasoning and internal mechanisms in exploiting this knowledge remains a key research area.…

Computation and Language · Computer Science 2024-08-07 Marco Bronzini , Carlo Nicolini , Bruno Lepri , Jacopo Staiano , Andrea Passerini

Inspired by the success of large language models, there is a trend toward developing graph foundation models to conduct diverse downstream tasks in various domains. However, current models often require extra fine-tuning to apply their…

Machine Learning · Computer Science 2025-05-16 Kai Wang , Siqiang Luo , Caihua Shan , Yifei Shen

Digital health research has advanced dynamic graph-based disease models, topological learning on simplicial complexes, and multimodal mixture-of-experts architectures, but these strands remain largely disconnected. We propose Graph Vector…

Machine Learning · Computer Science 2026-03-31 Silvano Coletti , Francesca Fallucchi

A variety of knowledge graph embedding approaches have been developed. Most of them obtain embeddings by learning the structure of the knowledge graph within a link prediction setting. As a result, the embeddings reflect only the structure…

Artificial Intelligence · Computer Science 2024-07-08 N'Dah Jean Kouagou , Caglar Demir , Hamada M. Zahera , Adrian Wilke , Stefan Heindorf , Jiayi Li , Axel-Cyrille Ngonga Ngomo

Graph neural networks (GNNs), as a group of powerful tools for representation learning on irregular data, have manifested superiority in various downstream tasks. With unstructured texts represented as concept maps, GNNs can be exploited…

Information Retrieval · Computer Science 2022-01-14 Hejie Cui , Jiaying Lu , Yao Ge , Carl Yang

The goal of representation learning of knowledge graph is to encode both entities and relations into a low-dimensional embedding spaces. Many recent works have demonstrated the benefits of knowledge graph embedding on knowledge graph…

Artificial Intelligence · Computer Science 2019-10-11 Wenqiang Liu , Hongyun Cai , Xu Cheng , Sifa Xie , Yipeng Yu , Hanyu Zhang

Graph neural networks (GNNs) are powerful graph-based deep-learning models that have gained significant attention and demonstrated remarkable performance in various domains, including natural language processing, drug discovery, and…

Machine Learning · Computer Science 2023-06-06 Jaykumar Kakkad , Jaspal Jannu , Kartik Sharma , Charu Aggarwal , Sourav Medya

Graphs serve as fundamental descriptors for systems composed of interacting elements, capturing a wide array of data types, from molecular interactions to social networks and knowledge graphs. In this paper, we present an exhaustive review…

Machine Learning · Computer Science 2024-11-13 Chenqing Hua

Graph neural networks (GNNs) have been widely used in representation learning on graphs and achieved state-of-the-art performance in tasks such as node classification and link prediction. However, most existing GNNs are designed to learn…

Machine Learning · Computer Science 2020-02-06 Seongjun Yun , Minbyul Jeong , Raehyun Kim , Jaewoo Kang , Hyunwoo J. Kim

We explore the applicability of Graph Neural Networks in learning the nuances of source code from a security perspective. Specifically, whether signatures of vulnerabilities in source code can be learned from its graph representation, in…

Software Engineering · Computer Science 2020-06-17 Sahil Suneja , Yunhui Zheng , Yufan Zhuang , Jim Laredo , Alessandro Morari

Estimation of the accuracy of a large-scale knowledge graph (KG) often requires humans to annotate samples from the graph. How to obtain statistically meaningful estimates for accuracy evaluation while keeping human annotation costs low is…

Databases · Computer Science 2019-07-24 Junyang Gao , Xian Li , Yifan Ethan Xu , Bunyamin Sisman , Xin Luna Dong , Jun Yang

Leveraging domain knowledge including fingerprints and functional groups in molecular representation learning is crucial for chemical property prediction and drug discovery. When modeling the relation between graph structure and molecular…

Machine Learning · Computer Science 2021-03-25 Yin Fang , Haihong Yang , Xiang Zhuang , Xin Shao , Xiaohui Fan , Huajun Chen

Resource allocation in business process management involves assigning resources to open tasks while considering factors such as individual roles, aptitudes, case-specific characteristics, and regulatory constraints. Current information…

Software Engineering · Computer Science 2025-03-28 Leon Bein , Niels Martin , Luise Pufahl

Security researchers grapple with the surge of malicious files, necessitating swift identification and classification of malware strains for effective protection. Visual classifiers and in particular Convolutional Neural Networks (CNNs)…

Cryptography and Security · Computer Science 2025-03-05 Matteo Brosolo , Vinod Puthuvath , Mauro Conti

Generative Knowledge Graph Construction (KGC) refers to those methods that leverage the sequence-to-sequence framework for building knowledge graphs, which is flexible and can be adapted to widespread tasks. In this study, we summarize the…

Computation and Language · Computer Science 2023-09-19 Hongbin Ye , Ningyu Zhang , Hui Chen , Huajun Chen

Code evolution is inevitable in modern software development. Changes to third-party APIs frequently break existing code and complicate maintenance, posing practical challenges for developers. While large language models (LLMs) have shown…

Software Engineering · Computer Science 2026-03-10 Jiazhen Kang , Yuchen Lu , Chen Jiang , Jinrui Liu , Tianhao Zhang , Bo Jiang , Ningyuan Sun , Tongtong Wu , Guilin Qi

Graphs are widely adopted for modeling complex systems, including financial, biological, and social networks. Nodes in networks usually entail attributes, such as the age or gender of users in a social network. However, real-world networks…

Machine Learning · Computer Science 2019-05-01 Yanning Shen , Geert Leus , Georgios B. Giannakis

The most approaches to Knowledge Base Question Answering are based on semantic parsing. In this paper, we address the problem of learning vector representations for complex semantic parses that consist of multiple entities and relations.…

Computation and Language · Computer Science 2018-08-14 Daniil Sorokin , Iryna Gurevych

Because of the rapid spread of COVID-19 to almost every part of the globe, huge volumes of data and case studies have been made available, providing researchers with a unique opportunity to find trends and make discoveries like never…

Machine Learning · Computer Science 2021-10-20 Sarwan Ali , Yijing Zhou , Murray Patterson