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Gene regulatory networks (GRNs) are essential for understanding cell fate decisions and disease mechanisms, yet cross-species GRN inference from single-cell RNA-seq data remains challenging due to noise, sparsity, and cross-species…

Genomics · Quantitative Biology 2026-01-19 Shuai Yan , Qingzhi Yu , Wengfeng Dai , Xiang Cheng

We study multiple change point localization under bandit feedback. An unknown piecewise-constant function on a compact interval can be queried sequentially at adaptively chosen inputs, and each query returns a noisy evaluation of the…

Machine Learning · Statistics 2026-05-14 Maximilian Graf , Victor Thuot

Hybrid sequence models--combining Transformer and state-space model layers--seek to gain the expressive versatility of attention as well as the computational efficiency of state-space model layers. Despite burgeoning interest in hybrid…

Machine Learning · Computer Science 2026-03-11 John Cooper , Ilias Diakonikolas , Mingchen Ma , Frederic Sala

Avoiding the introduction of ghosts when synthesising LDR images as high dynamic range (HDR) images is a challenging task. Convolutional neural networks (CNNs) are effective for HDR ghost removal in general, but are challenging to deal with…

Computer Vision and Pattern Recognition · Computer Science 2023-04-24 Fangfang Zhou , Dan Zhang , Zhenming Fu

We present a Three-level Hierarchical Transformer Network (3-level-HTN) for modeling long-term dependencies across clinical notes for the purpose of patient-level prediction. The network is equipped with three levels of Transformer-based…

Computation and Language · Computer Science 2021-12-20 Yuqi Si , Kirk Roberts

State of the art sequence-to-sequence models for large scale tasks perform a fixed number of computations for each input sequence regardless of whether it is easy or hard to process. In this paper, we train Transformer models which can make…

Computation and Language · Computer Science 2020-02-18 Maha Elbayad , Jiatao Gu , Edouard Grave , Michael Auli

We propose a flexible deep neural network (DNN) framework for modeling survival data within a partially linear regression structure. The approach preserves interpretability through a parametric linear component for covariates of primary…

Machine Learning · Statistics 2026-04-28 Asaf Ben Arie , Malka Gorfine

Transformer architectures have achieved state-of-the-art performance across natural language tasks, yet they fundamentally misrepresent the hierarchical nature of human language by processing text as flat token sequences. This results in…

Computation and Language · Computer Science 2025-09-26 Ayan Sar , Sampurna Roy , Kanav Gupta , Anurag Kaushish , Tanupriya Choudhury , Abhijit Kumar

Deep learning has revolutionized many industries by enabling models to automatically learn complex patterns from raw data, reducing dependence on manual feature engineering. However, deep learning algorithms are sensitive to input data, and…

Machine Learning · Computer Science 2025-07-21 Mert Sehri , Zehui Hua , Francisco de Assis Boldt , Patrick Dumond

Diffusion Transformers rely on static patchify tokenization, assigning the same token budget to smooth backgrounds, detailed object regions, noisy early timesteps, and late-stage refinements. We introduce the Dynamic Chunking Diffusion…

Computer Vision and Pattern Recognition · Computer Science 2026-05-08 Akash Haridas , Utkarsh Saxena , Parsa Ashrafi Fashi , Mehdi Rezagholizadeh , Vikram Appia , Emad Barsoum

The paradigm of Transformers using the self-attention mechanism has manifested its advantage in learning graph-structured data. Yet, Graph Transformers are capable of modeling full range dependencies but are often deficient in extracting…

Machine Learning · Computer Science 2024-09-11 Minhong Zhu , Zhenhao Zhao , Weiran Cai

This extended abstract explores the integration of federated learning with deep transfer hashing for distributed prediction tasks, emphasizing resource-efficient client training from evolving data streams. Federated learning allows multiple…

Machine Learning · Computer Science 2024-09-20 Manuel Röder , Frank-Michael Schleif

Deep neural networks (DNNs) offer plenty of challenges in executing efficient computation at edge nodes, primarily due to the huge hardware resource demands. The article proposes HYDRA, hybrid data multiplexing, and runtime layer…

Hardware Architecture · Computer Science 2026-03-31 Sonu Kumar , Komal Gupta , Gopal Raut , Mukul Lokhande , Santosh Kumar Vishvakarma

Large-scale foundation models for scientific machine learning adapt to physical settings unseen during training, such as zero-shot transfer between turbulent scales. This phenomenon, in-context learning, challenges conventional…

Machine Learning · Computer Science 2026-04-14 Anthony Bao , Jeffrey Lai , William Gilpin

Transformer-based language models utilize the attention mechanism for substantial performance improvements in almost all natural language processing (NLP) tasks. Similar attention structures are also extensively studied in several other…

Computation and Language · Computer Science 2023-05-17 Nurullah Sevim , Ege Ozan Özyedek , Furkan Şahinuç , Aykut Koç

With the rise of Transformer models in NLP and CV domain, Multi-Head Attention has been proven to be a game-changer. However, its expensive computation poses challenges to the model throughput and efficiency, especially for the long…

Image and Video Processing · Electrical Eng. & Systems 2024-04-12 Jiing-Ping Wang , Ming-Guang Lin , An-Yeu , Wu

Adaptive inference is a promising technique to improve the computational efficiency of deep models at test time. In contrast to static models which use the same computation graph for all instances, adaptive networks can dynamically adjust…

Computer Vision and Pattern Recognition · Computer Science 2019-08-20 Hao Li , Hong Zhang , Xiaojuan Qi , Ruigang Yang , Gao Huang

Deeply learned representations have achieved superior image retrieval performance in a retrieve-then-rerank manner. Recent state-of-the-art single stage model, which heuristically fuses local and global features, achieves promising…

Computer Vision and Pattern Recognition · Computer Science 2022-07-04 Yuxin Song , Ruolin Zhu , Min Yang , Dongliang He

The Transformer model has achieved state-of-the-art performance in many sequence modeling tasks. However, how to leverage model capacity with large or variable depths is still an open challenge. We present a probabilistic framework to…

Computation and Language · Computer Science 2020-10-19 Xian Li , Asa Cooper Stickland , Yuqing Tang , Xiang Kong

Recently, an extensive amount of research has been focused on compressing and accelerating Deep Neural Networks (DNN). So far, high compression rate algorithms require part of the training dataset for a low precision calibration, or a…

Machine Learning · Computer Science 2020-04-08 Matan Haroush , Itay Hubara , Elad Hoffer , Daniel Soudry