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This paper aims to discuss a method of quantifying the 'shape' of data, via a methodology called topological data analysis. The main tool within topological data analysis is persistent homology; this is a means of measuring the shape of…

Algebraic Topology · Mathematics 2022-09-14 Tristan Gowdridge , Nikolaos Devilis , Keith Worden

Persistent Laplacians are matrix operators that track how the shape and structure of data transform across scales and are popularly adopted in biology, physics, and machine learning. Their eigenvalues are concise descriptors of geometric…

Machine Learning · Computer Science 2025-06-27 Le Vu Anh , Mehmet Dik , Nguyen Viet Anh

Graph contrastive learning (GCL) has recently emerged as a new concept which allows for capitalizing on the strengths of graph neural networks (GNNs) to learn rich representations in a wide variety of applications which involve abundant…

Machine Learning · Computer Science 2024-06-26 Yuzhou Chen , Jose Frias , Yulia R. Gel

Persistent homology, a method from topological data analysis, extracts robust, multi-scale features from data. It produces stable representations of time series by applying varying thresholds to their values (a process known as a…

Computation and Language · Computer Science 2026-04-24 Marius Huber , David R. Reich , Lena A. Jäger

We introduce topological differential testing (TDT), an approach to extracting the consensus behavior of a set of programs on a corpus of inputs. TDT uses the topological notion of a simplicial complex (and implicitly draws on richer…

Software Engineering · Computer Science 2020-03-06 Kristopher Ambrose , Steve Huntsman , Michael Robinson , Matvey Yutin

Interleaving distances are used widely in Topological Data Analysis (TDA) as a tool for comparing topological signatures of datasets. The theory of interleaving distances has been extended through various category-theoretic constructions,…

Algebraic Topology · Mathematics 2026-01-21 Patrick K. McFaddin , Tom Needham

In this article, we introduce a Topological Data Analysis (TDA) pipeline for neural spike train data. Understanding how the brain transforms sensory information into perception and behavior requires analyzing coordinated neural population…

Methodology · Statistics 2025-12-10 Cagatay Ayhan , Audrey N. Nash , Roberto Vincis , Martin Bauer , Richard Bertram , Tom Needham

Coupled map lattices (CMLs) are prototypical dynamical systems on networks/graphs. They exhibit complex patterns generated via the interplay of diffusive/Laplacian coupling and nonlinear reactions modelled by a single iterated map at each…

Chaotic Dynamics · Physics 2021-09-24 Tobias Böhle , Christian Kuehn , Raffaella Mulas , Jürgen Jost

The scale and complexity of modern data sets and the limitations associated with testing large numbers of hypotheses underline the need for feature selection methods. Spectral techniques rank features according to their degree of…

Machine Learning · Statistics 2018-11-09 Kiya W. Govek , Venkata S. Yamajala , Pablo G. Camara

Persistent homology (PH) is a rigorous mathematical theory that provides a robust descriptor of data in the form of persistence diagrams (PDs) which are 2D multisets of points. Their variable size makes them, however, difficult to combine…

Machine Learning · Statistics 2019-06-14 Bartosz Zielinski , Michal Lipinski , Mateusz Juda , Matthias Zeppelzauer , Pawel Dlotko

In real-world systems, the relationships and connections between components are highly complex. Real systems are often described as networks, where nodes represent objects in the system and edges represent relationships or connections…

Algebraic Topology · Mathematics 2024-06-24 Shen Zhang

We redevelop persistent homology (topological persistence) from a categorical point of view. The main objects of study are diagrams, indexed by the poset of real numbers, in some target category. The set of such diagrams has an interleaving…

Algebraic Topology · Mathematics 2014-05-13 Peter Bubenik , Jonathan A. Scott

Topological Data Analysis (TDA) is an approach to handle with big data by studying its shape. A main tool of TDA is the persistence diagram, and one can use it to compare data sets. One approach to learn on the similarity between two…

Applications · Statistics 2020-03-04 Sarit Agami

Combinatorial and topological structures, such as graphs, simplicial complexes, and cell complexes, form the foundation of geometric and topological deep learning (GDL and TDL) architectures. These models aggregate signals over such…

Machine Learning · Computer Science 2026-05-28 Chuan-Shen Hu

The intrinsic connection between lattice theory and topology is fairly well established, For instance, the collection of open subsets of a topological subspace always forms a distributive lattice. Persistent homology has been one of the…

Rings and Algebras · Mathematics 2014-02-03 Primož Škraba , João Pita Costa

Topological Data Analysis (TDA) is a modern approach to Data Analysis focusing on the topological features of data; it has been widely studied in recent years and used extensively in Biology, Physics, and many other areas. However,…

Mathematical Finance · Quantitative Finance 2023-07-11 Miguel A. Ruiz-Ortiz , José Carlos Gómez-Larrañaga , Jesús Rodríguez-Viorato

Developing reliable methods to discriminate different transient brain states that change over time is a key neuroscientific challenge in brain imaging studies. Topological data analysis (TDA), a novel framework based on algebraic topology,…

Neurons and Cognition · Quantitative Biology 2023-12-19 Moo K. Chung , Soumya Das , Hernando Ombao

Persistent homology enables fast and computable comparison of topological objects. However, it is naturally limited to the analysis of topological spaces. We extend the theory of persistence, by guaranteeing robustness and computability to…

Combinatorics · Mathematics 2020-09-16 Mattia G. Bergomi , Massimo Ferri , Pietro Vertechi , Lorenzo Zuffi

In this paper, we propose HLSAD, a novel method for detecting anomalies in time-evolving simplicial complexes. While traditional graph anomaly detection techniques have been extensively studied, they often fail to capture changes in…

Machine Learning · Computer Science 2025-06-02 Florian Frantzen , Michael T. Schaub

Incorporating higher-order interactions in information processing enables us to build more accurate models, gain deeper insights into complex systems, and address real-world challenges more effectively. However, existing methods, such as…

Quantum Physics · Physics 2024-04-25 Ryu Hayakawa , Kuo-Chin Chen , Min-Hsiu Hsieh
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