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In this work, we focus on the challenging task, neuro-disease classification, using functional magnetic resonance imaging (fMRI). In population graph-based disease analysis, graph convolutional neural networks (GCNs) have achieved…

Machine Learning · Computer Science 2022-11-29 Liang Peng , Nan Wang , Jie Xu , Xiaofeng Zhu , Xiaoxiao Li

Deep models trained in supervised mode have achieved remarkable success on a variety of tasks. When labeled samples are limited, self-supervised learning (SSL) is emerging as a new paradigm for making use of large amounts of unlabeled…

Machine Learning · Computer Science 2022-04-26 Yaochen Xie , Zhao Xu , Jingtun Zhang , Zhengyang Wang , Shuiwang Ji

The rapid advancement in self-supervised representation learning has highlighted its potential to leverage unlabeled data for learning rich visual representations. However, the existing techniques, particularly those employing different…

Computer Vision and Pattern Recognition · Computer Science 2024-12-18 Sana Ayromlou , Vahid Reza Khazaie , Fereshteh Forghani , Arash Afkanpour

The success of deep learning notoriously requires larger amounts of costly annotated data. This has led to the development of self-supervised learning (SSL) that aims to alleviate this limitation by creating domain specific pretext tasks on…

Machine Learning · Computer Science 2020-06-19 Wei Jin , Tyler Derr , Haochen Liu , Yiqi Wang , Suhang Wang , Zitao Liu , Jiliang Tang

Graph-based Semi-Supervised Learning (SSL) aims to transfer the labels of a handful of labeled data to the remaining massive unlabeled data via a graph. As one of the most popular graph-based SSL approaches, the recently proposed Graph…

Machine Learning · Computer Science 2020-09-22 Sheng Wan , Shirui Pan , Jian Yang , Chen Gong

Resting-state functional magnetic resonance imaging (rs-fMRI) offers a non-invasive approach to examining abnormal brain connectivity associated with brain disorders. Graph neural network (GNN) gains popularity in fMRI representation…

Quantitative Methods · Quantitative Biology 2023-08-22 Junhao Zhang , Qianqian Wang , Xiaochuan Wang , Lishan Qiao , Mingxia Liu

Self-supervised learning (SSL) on graphs generates node and graph representations (i.e., embeddings) that can be used for downstream tasks such as node classification, node clustering, and link prediction. Graph SSL is particularly useful…

Machine Learning · Computer Science 2025-09-26 Jiali Chen , Avijit Mukherjee

Graph self-supervised learning can reduce the need for labeled graph data and has been widely used in recommendation, social networks, and other web applications. However, existing methods often underuse high-frequency signals and may…

Machine Learning · Computer Science 2026-04-20 Haojie Li , Mengjiao Zhang , Guanfeng Liu , Qiang Hu , Yan Wang , Junwei Du

Deep learning on graphs has recently achieved remarkable success on a variety of tasks, while such success relies heavily on the massive and carefully labeled data. However, precise annotations are generally very expensive and…

Machine Learning · Computer Science 2021-09-30 Lirong Wu , Haitao Lin , Zhangyang Gao , Cheng Tan , Stan. Z. Li

Self-supervised Learning (SSL) aims at learning representations of objects without relying on manual labeling. Recently, a number of SSL methods for graph representation learning have achieved performance comparable to SOTA semi-supervised…

Machine Learning · Computer Science 2021-08-25 Zekarias T. Kefato , Sarunas Girdzijauskas , Hannes Stärk

Self-supervised learning has shown its promising capability in graph representation learning in recent work. Most existing pre-training strategies usually choose the popular Graph neural networks (GNNs), which can be seen as a special form…

Machine Learning · Computer Science 2023-06-16 Yilin Ding , Zhen Liu , Hao Hao

Functional connectivity (FC) as derived from fMRI has emerged as a pivotal tool in elucidating the intricacies of various psychiatric disorders and delineating the neural pathways that underpin cognitive and behavioral dynamics inherent to…

Neurons and Cognition · Quantitative Biology 2024-01-22 Gang Qu , Anton Orlichenko , Junqi Wang , Gemeng Zhang , Li Xiao , Aiying Zhang , Zhengming Ding , Yu-Ping Wang

Semi-supervised learning (SSL) has recently received increased attention from machine learning researchers. By enabling effective propagation of known labels in graph-based deep learning (GDL) algorithms, SSL is poised to become an…

Machine Learning · Computer Science 2022-03-24 Alex Morehead , Watchanan Chantapakul , Jianlin Cheng

Functional magnetic resonance imaging (fMRI) is widely used for studying and diagnosing brain disorders, with functional connectivity (FC) matrices providing powerful representations of large-scale neural interactions. However, existing…

Tissues and Organs · Quantitative Biology 2026-04-17 Qianyu Chen , Shujian Yu

Although supervised learning has been highly successful in improving the state-of-the-art in the domain of image-based computer vision in the past, the margin of improvement has diminished significantly in recent years, indicating that a…

Computer Vision and Pattern Recognition · Computer Science 2023-05-24 Utku Ozbulak , Hyun Jung Lee , Beril Boga , Esla Timothy Anzaku , Homin Park , Arnout Van Messem , Wesley De Neve , Joris Vankerschaver

We explore the downstream task performances for graph neural network (GNN) self-supervised learning (SSL) methods trained on subgraphs extracted from relational databases (RDBs). Intuitively, this joint use of SSL and GNNs should allow to…

Machine Learning · Computer Science 2023-02-10 Shengchao Liu , David Vazquez , Jian Tang , Pierre-André Noël

Predicting cognition from neuroimaging data in healthy individuals offers insights into the neural mechanisms underlying cognitive abilities, with potential applications in precision medicine and early detection of neurological and…

Machine Learning · Computer Science 2025-07-29 Jagruti Patel , Mikkel Schöttner , Thomas A. W. Bolton , Patric Hagmann

Psychiatric disorders involve complex neural activity changes, with functional magnetic resonance imaging (fMRI) data serving as key diagnostic evidence. However, data scarcity and the diverse nature of fMRI information pose significant…

Image and Video Processing · Electrical Eng. & Systems 2025-09-16 Mujie Liu , Mengchu Zhu , Qichao Dong , Ting Dang , Jiangang Ma , Jing Ren , Feng Xia

Self-supervised learning (SSL) is a powerful paradigm for learning from unlabeled time-series data. However, popular methods such as masked autoencoders (MAEs) rely on reconstructing inputs from a fixed, predetermined masking ratio. Instead…

Machine Learning · Computer Science 2026-03-03 Duy Nguyen , Jiachen Yao , Jiayun Wang , Julius Berner , Animashree Anandkumar

Graph Neural Networks (GNNs) have been shown to be a powerful tool for generating predictions from biological data. Their application to neuroimaging data such as functional magnetic resonance imaging (fMRI) scans has been limited. However,…

Image and Video Processing · Electrical Eng. & Systems 2021-12-03 Katharina Zühlsdorff , Clayton M. Rabideau
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