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This paper extends the work in [Suzuki, 1996] and presents an efficient depth-first branch-and-bound algorithm for learning Bayesian network structures, based on the minimum description length (MDL) principle, for a given (consistent)…

Artificial Intelligence · Computer Science 2013-01-18 Jin Tian

Learning continuous-time stochastic dynamics is a fundamental and essential problem in modeling sporadic time series, whose observations are irregular and sparse in both time and dimension. For a given system whose latent states and…

Machine Learning · Computer Science 2021-04-30 Yingru Liu , Yucheng Xing , Xuewen Yang , Xin Wang , Jing Shi , Di Jin , Zhaoyue Chen

Deep neural networks (DNNs) have shown their success as high-dimensional function approximators in many applications; however, training DNNs can be challenging in general. DNN training is commonly phrased as a stochastic optimization…

Machine Learning · Computer Science 2021-09-30 Elizabeth Newman , Julianne Chung , Matthias Chung , Lars Ruthotto

A Bayesian network is a widely used probabilistic graphical model with applications in knowledge discovery and prediction. Learning a Bayesian network (BN) from data can be cast as an optimization problem using the well-known…

Artificial Intelligence · Computer Science 2018-11-14 Zhenyu A. Liao , Charupriya Sharma , James Cussens , Peter van Beek

Predicting the effect of amino acid mutations on enzyme thermodynamic stability (DDG) is fundamental to protein engineering and drug design. While recent deep learning approaches have shown promise, they often process sequence and structure…

Machine Learning · Computer Science 2025-11-10 Abigail Lin

One of the most challenging tasks when adopting Bayesian Networks (BNs) is the one of learning their structure from data. This task is complicated by the huge search space of possible solutions, and by the fact that the problem is NP-hard.…

Machine Learning · Computer Science 2018-08-07 Stefano Beretta , Mauro Castelli , Ivo Goncalves , Roberto Henriques , Daniele Ramazzotti

The remarkable performance of overparameterized deep neural networks (DNNs) must arise from an interplay between network architecture, training algorithms, and structure in the data. To disentangle these three components, we apply a…

Machine Learning · Computer Science 2025-07-09 Chris Mingard , Henry Rees , Guillermo Valle-Pérez , Ard A. Louis

Graphical models are widely used to study biological networks. Interventions on network nodes are an important feature of many experimental designs for the study of biological networks. In this paper we put forward a causal variant of…

Methodology · Statistics 2015-06-17 Simon E. F. Spencer , Steven M. Hill , Sach Mukherjee

Combining Bayesian nonparametrics and a forward model selection strategy, we construct parsimonious Bayesian deep networks (PBDNs) that infer capacity-regularized network architectures from the data and require neither cross-validation nor…

Machine Learning · Statistics 2019-01-03 Mingyuan Zhou

Learning the structure of dependencies among multiple random variables is a problem of considerable theoretical and practical interest. Within the context of Bayesian Networks, a practical and surprisingly successful solution to this…

Machine Learning · Computer Science 2021-01-20 Giulio Caravagna , Daniele Ramazzotti

Generative adversarial network (GAN) has been shown to be useful in various applications, such as image recognition, text processing and scientific computing, due its strong ability to learn complex data distributions. In this study, a…

Geophysics · Physics 2021-09-14 Tianhao He , Dongxiao Zhang

Convolutional neural networks (CNNs) have been established as the main workhorse in image data processing; nonetheless, they require large amounts of data to train, often produce overconfident predictions, and frequently lack the ability to…

Computer Vision and Pattern Recognition · Computer Science 2025-10-14 Sarah Harkins Dayton , Hayden Everett , Ioannis Schizas , David L. Boothe , Vasileios Maroulas

Imbalanced data with a skewed class distribution are common in many real-world applications. Deep Belief Network (DBN) is a machine learning technique that is effective in classification tasks. However, conventional DBN does not work well…

Machine Learning · Computer Science 2018-05-08 Chong Zhang , Kay Chen Tan , Haizhou Li , Geok Soon Hong

In the context of big data analysis, the divide-and-conquer methodology refers to a multiple-step process: first splitting a data set into several smaller ones; then analyzing each set separately; finally combining results from each…

Machine Learning · Statistics 2021-02-23 Xueying Chen , Jerry Q. Cheng , Min-ge Xie

Deep neural networks (DNNs) are state-of-the-art solutions for many machine learning applications, and have been widely used on mobile devices. Running DNNs on resource-constrained mobile devices often requires the help from edge servers…

Networking and Internet Architecture · Computer Science 2019-03-11 Wenqi Shi , Yunzhong Hou , Sheng Zhou , Zhisheng Niu , Yang Zhang , Lu Geng

Intensive research has been conducted on the verification and validation of deep neural networks (DNNs), aiming to understand if, and how, DNNs can be applied to safety critical applications. However, existing verification and validation…

Machine Learning · Computer Science 2021-03-08 Nicolas Berthier , Amany Alshareef , James Sharp , Sven Schewe , Xiaowei Huang

On the forefront of scientific computing, Deep Learning (DL), i.e., machine learning with Deep Neural Networks (DNNs), has emerged a powerful new tool for solving Partial Differential Equations (PDEs). It has been observed that DNNs are…

Machine Learning · Computer Science 2025-11-12 Simone Brugiapaglia , Nick Dexter , Samir Karam , Weiqi Wang

We present a new approach for learning the structure of a treewidth-bounded Bayesian Network (BN). The key to our approach is applying an exact method (based on MaxSAT) locally, to improve the score of a heuristically computed BN. This…

Artificial Intelligence · Computer Science 2021-02-08 Vaidyanathan P. R. , Stefan Szeider

Recent research works for solving partial differential equations (PDEs) with deep neural networks (DNNs) have demonstrated that spatiotemporal function approximators defined by auto-differentiation are effective for approximating nonlinear…

Numerical Analysis · Mathematics 2021-09-21 Haoxiang Huang , Yingjie Liu , Vigor Yang

We study the problem of learning Bayesian networks where an $\epsilon$-fraction of the samples are adversarially corrupted. We focus on the fully-observable case where the underlying graph structure is known. In this work, we present the…

Machine Learning · Computer Science 2021-05-13 Yu Cheng , Honghao Lin